Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
hgug4112a
•
reset
3
votes
9
replies
2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma
annotation
agilent
hgug4112a
microarray
8.3 years ago
Konstantinos Yeles
▴ 80
0
votes
0
replies
1.1k
views
virtualArray package
Annotation
Preprocessing
hgu133plus2
hgug4112a
9.7 years ago
Guest User
★ 13k
0
votes
0
replies
8.8k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray
Annotation
Preprocessing
hgu133plus2
hgug4112a
virtualArray
Microarray
hgug4112a
9.9 years ago
Guest User
★ 13k
0
votes
1
reply
919
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation
hgug4112a
Annotation
hgug4112a
updated 10.6 years ago by
James W. MacDonald
65k • written 10.6 years ago by
Pitea Adriana
▴ 10
0
votes
0
replies
1.3k
views
Quantiles from virtualArray example without batcheffect removal are all the same
Microarray
BatchEffect
hgu133plus2
hgug4112a
virtualArray
Microarray
BatchEffect
hgug4112a
11.1 years ago
Daniel Emden
▴ 10
0
votes
0
replies
1.1k
views
Mapping genes to their gene sets for GSEA
Microarray
Genetics
GO
hgu95av2
hgug4112a
Microarray
Genetics
GO
hgu95av2
hgug4112a
11.9 years ago
Yoo, Seungyeul
▴ 110
0
votes
1
reply
815
views
How to create annotation package for not a supported organism
Annotation
GO
Organism
hgug4112a
Annotation
GO
Organism
hgug4112a
updated 12.7 years ago by
Valerie Obenchain
★ 6.8k • written 12.7 years ago by
Alogmail2@aol.com
▴ 90
0
votes
0
replies
997
views
FW: normalization one color microarrays
Normalization
hgug4112a
PROcess
Agi4x44PreProcess
Normalization
hgug4112a
PROcess
12.7 years ago
Paz Tapia Ramirez
▴ 150
0
votes
1
reply
1.2k
views
Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a
Agi4x44PreProcess
hgug4112a
Agi4x44PreProcess
updated 13.8 years ago by
Neel Aluru
▴ 460 • written 13.8 years ago by
Turner, Julia
▴ 20
0
votes
1
reply
877
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a
RmiR
hgug4112a
RmiR
updated 14.0 years ago by
Martin Morgan
25k • written 14.0 years ago by
Wendelin Waunzel
▴ 10
0
votes
2
replies
959
views
Agilent annotation source
Annotation
hgug4112a
oligo
Annotation
hgug4112a
oligo
updated 14.3 years ago by
James W. MacDonald
65k • written 14.3 years ago by
Axel Klenk
★ 1.0k
0
votes
0
replies
877
views
Questions on the package "RmiR"
miRNA
hgug4112a
RmiR
miRNA
hgug4112a
RmiR
14.3 years ago
jason0701
▴ 190
0
votes
0
replies
847
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a
probe
limma
Agi4x44PreProcess
hgug4112a
probe
limma
Agi4x44PreProcess
14.4 years ago
Pedro Lopez-Romero
▴ 120
0
votes
0
replies
1.3k
views
on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO
hgug4112a
probe
GO
hgug4112a
probe
14.4 years ago
Massimo Pinto
▴ 390
0
votes
0
replies
827
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation
hgug4112a
Annotation
hgug4112a
14.5 years ago
Massimo Pinto
▴ 390
0
votes
3
replies
1.8k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a
hgug4112a
updated 14.5 years ago by
rgentleman
★ 5.5k • written 14.5 years ago by
Massimo Pinto
▴ 390
0
votes
11
replies
1.8k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a
hgug4112a
updated 14.6 years ago by
Francois Pepin
★ 1.3k • written 14.6 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
9.2k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO
hgug4112a
GO
hgug4112a
updated 14.6 years ago by
James W. MacDonald
65k • written 14.6 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
828
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO
GUI
hgug4112a
limma
PROcess
Agi4x44PreProcess
GO
GUI
hgug4112a
limma
PROcess
14.8 years ago
Massimo Pinto
▴ 390
0
votes
1
reply
1.2k
views
GOstats: HyperGTest for KEGG
Annotation
GO
Yeast
hgu133a
hgu133b
hgu133plus2
hgu95a
hgu95av2
hgug4110b
hgug4112a
GO
updated 15.3 years ago by
Marc Carlson
★ 7.2k • written 15.3 years ago by
Paul Evans
▴ 180
0
votes
0
replies
1.2k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation
GO
Yeast
hgu133a
hgu133b
hgu133plus2
hgu95a
hgu95av2
hgug4110b
hgug4112a
GO
15.3 years ago
Paul Evans
▴ 180
0
votes
2
replies
1.7k
views
Agilent G4112F with hgug4112a.db?
GO
hgug4112a
GO
hgug4112a
updated 15.5 years ago by
Francois Pepin
★ 1.3k • written 15.5 years ago by
Philipp Pagel
▴ 190
0
votes
1
reply
931
views
Agilent spike-in probes
Annotation
Normalization
GO
hgug4112a
limma
Annotation
Normalization
GO
hgug4112a
limma
updated 16.1 years ago by
Sean Davis
21k • written 16.1 years ago by
Srinivas Iyyer
▴ 600
0
votes
1
reply
897
views
Agilent spike-in probes
Annotation
Normalization
GO
hgug4112a
limma
Annotation
Normalization
GO
hgug4112a
limma
updated 16.1 years ago by
Naomi Altman
★ 6.0k • written 16.1 years ago by
Sean Davis
21k
24 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Awards
• All
Scholar
to
Michael Love
41k
Popular Question
to
Malcolm Cook
★ 1.6k
Teacher
to
Gordon Smyth
50k
Popular Question
to
priyanka.m
• 0
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Locations
• All
France,
27 minutes ago
India,
40 minutes ago
The city by the bay,
52 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 543 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6