Bioconductor Htseq

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by sakura.nussbaum ▴ 10

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4.5k

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voom htseq edgeR limma RNASeq123

updated 5.4 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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731

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 17 months ago by Michael Love 42k • written 18 months ago by abhay.kanodia • 0

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1.0k

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DESeq2 microRNA HTSeq

16 months ago abhay.kanodia • 0

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727

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DESeq2 htseq DEGseq RNASeq read

updated 18 months ago by Michael Love 42k • written 18 months ago by CP • 0

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578

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DEXSeq HTSeq R

9 months ago • updated 8 months ago yr542 • 0

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1.1k

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software error HTSeq installation

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by eric33150 • 0

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1.5k

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DEXSeq dexseq_count htseq

7.2 years ago mat.lesche ▴ 90

8 results • Page 1 of 1

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Comment: Create protein sequences including variants from a VCF file by Yun • 0

This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object

Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0

Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Guido Hooiveld ★ 4.0k

FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…

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Comment: How to correctly adjust for gender in edgeR

Create protein sequences including variants from a VCF file

A: DEXSeq design formula

Answer: SGSeq: moving toward diffex from SGSeq analysis

Answer: How to design DEXSeq formula for multiple variables

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