Bioconductor Htseqtools

Showing : htseqtools • reset

votes

replies

1.5k

views

Deprecation chipseq htseqtools Bioconductor

updated 4.6 years ago by Basti ▴ 780 • written 4.6 years ago by Mick • 0

vote

replies

4.2k

views

htseqtools deseq2 counts cuffdiff

9.7 years ago Jon Bråte ▴ 270

votes

replies

2.2k

views

Coverage htSeqTools Coverage htSeqTools

updated 13.7 years ago by Valerie Obenchain ★ 6.8k • written 13.7 years ago by Juan L. Mateo ▴ 80

votes

1.9k

views

GenomicRanges htSeqTools GenomicRanges htSeqTools

updated 13.7 years ago by Vincent J. Carey, Jr. 6.7k • written 13.7 years ago by Juan L. Mateo ▴ 80

votes

1.1k

views

IRanges htSeqTools IRanges htSeqTools

updated 13.8 years ago by Michael Lawrence ★ 11k • written 13.8 years ago by Ian D. ▴ 70

votes

replies

1.2k

views

convert htSeqTools convert htSeqTools

13.8 years ago Oscar Reina ▴ 20

votes

replies

1.5k

views

htSeqTools ASSIGN htSeqTools ASSIGN

updated 13.8 years ago by Michael Lawrence ★ 11k • written 13.8 years ago by Ian D. ▴ 70

7 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Awards • All