Bioconductor Htseqtools

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Deprecation chipseq htseqtools Bioconductor

updated 4.7 years ago by Basti ▴ 780 • written 4.7 years ago by Mick • 0

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4.3k

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htseqtools deseq2 counts cuffdiff

9.8 years ago Jon Bråte ▴ 270

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2.2k

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Coverage htSeqTools Coverage htSeqTools

updated 13.8 years ago by Valerie Obenchain ★ 6.8k • written 13.8 years ago by Juan L. Mateo ▴ 80

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1.9k

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GenomicRanges htSeqTools GenomicRanges htSeqTools

updated 13.8 years ago by Vincent J. Carey, Jr. 6.7k • written 13.8 years ago by Juan L. Mateo ▴ 80

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1.1k

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IRanges htSeqTools IRanges htSeqTools

updated 13.8 years ago by Michael Lawrence ★ 11k • written 13.8 years ago by Ian D. ▴ 70

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convert htSeqTools convert htSeqTools

13.9 years ago Oscar Reina ▴ 20

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1.6k

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htSeqTools ASSIGN htSeqTools ASSIGN

updated 13.9 years ago by Michael Lawrence ★ 11k • written 13.9 years ago by Ian D. ▴ 70

7 results • Page 1 of 1

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Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Answer: p.adjust BH Question by Gordon Smyth 53k

Duplicate of https://support.bioconductor.org/p/41077/

Answer: Large logFC but somewhat high FDR by Gordon Smyth 53k

Glad you're getting good use out of the package. The results that you show seem pretty much as one would expect, with nothing surprising. …

Comment: After running samtools, the featureCounts command crashed. by MarcHintz99 • 0

Thanks for shairng https://subread.sourceforge.net/

Comment: Senior Teaching Fellow (MSc Computational Biomedicine) by eja.ger.m • 0

Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…

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Comment: upstream git branches of bioc-release

A: p.adjust BH generates duplicate values

Answer: gene Set with high AUC score but no cells assigned to cell type

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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Popular Question to story.benjamin ▴ 20