Bioconductor Htseqtools

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1.3k

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Deprecation chipseq htseqtools Bioconductor

updated 4.1 years ago by Basti ▴ 780 • written 4.1 years ago by Mick • 0

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3.9k

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htseqtools deseq2 counts cuffdiff

9.1 years ago Jon Bråte ▴ 260

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2.1k

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Coverage htSeqTools Coverage htSeqTools

updated 13.1 years ago by Valerie Obenchain ★ 6.8k • written 13.1 years ago by Juan L. Mateo ▴ 80

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1.8k

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GenomicRanges htSeqTools GenomicRanges htSeqTools

updated 13.1 years ago by Vincent J. Carey, Jr. 6.7k • written 13.1 years ago by Juan L. Mateo ▴ 80

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975

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IRanges htSeqTools IRanges htSeqTools

updated 13.2 years ago by Michael Lawrence ★ 11k • written 13.2 years ago by Ian D. ▴ 70

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1.1k

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convert htSeqTools convert htSeqTools

13.2 years ago Oscar Reina ▴ 20

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1.4k

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htSeqTools ASSIGN htSeqTools ASSIGN

updated 13.2 years ago by Michael Lawrence ★ 11k • written 13.2 years ago by Ian D. ▴ 70

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Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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