Showing : htseqtools • reset
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Which library now contains the ssdCoverage command that used to be found in the htseqtools package for R version 4.0.1 ?
Deprecation chipseq htseqtools Bioconductor
updated 4.5 years ago by ▴ 780 • written 4.5 years ago by • 0
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HTSeq-count on several gff3/gtf files for use in DESeq2
htseqtools deseq2 counts cuffdiff
9.6 years ago Jon Bråte ▴ 270
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htSeqTools errors
Coverage htSeqTools Coverage htSeqTools
updated 13.6 years ago by ★ 6.8k • written 13.6 years ago by ▴ 80
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GenomicRanges requires a IRanges version not available in the repository
GenomicRanges htSeqTools GenomicRanges htSeqTools
updated 13.6 years ago by 6.7k • written 13.6 years ago by ▴ 80
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htSeqTools - filtered reads > BED?
IRanges htSeqTools IRanges htSeqTools
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ▴ 70
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htSeqTools: using GRanges and GRangesList
convert htSeqTools convert htSeqTools
13.7 years ago Oscar Reina ▴ 20
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htSeqTools - naming RangedData objects?
htSeqTools ASSIGN htSeqTools ASSIGN
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ▴ 70
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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la by zhaoqiansun0592 • 0
Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…
Comment: Could we detect difference at pathway level but not significant different at gen by zhaoqiansun0592 • 0
Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by zhaoqiansun0592 • 0
Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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