Bioconductor Htseqtools

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1.2k

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Deprecation chipseq htseqtools Bioconductor

updated 3.8 years ago by Basti ▴ 780 • written 3.8 years ago by Mick • 0

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3.7k

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htseqtools deseq2 counts cuffdiff

8.9 years ago Jon Bråte ▴ 260

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2.0k

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Coverage htSeqTools Coverage htSeqTools

updated 12.8 years ago by Valerie Obenchain ★ 6.8k • written 12.9 years ago by Juan L. Mateo ▴ 80

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1.7k

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GenomicRanges htSeqTools GenomicRanges htSeqTools

updated 12.9 years ago by Vincent J. Carey, Jr. 6.7k • written 12.9 years ago by Juan L. Mateo ▴ 80

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922

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IRanges htSeqTools IRanges htSeqTools

updated 12.9 years ago by Michael Lawrence ★ 11k • written 12.9 years ago by Ian D. ▴ 70

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1.1k

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convert htSeqTools convert htSeqTools

12.9 years ago Oscar Reina ▴ 20

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1.4k

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htSeqTools ASSIGN htSeqTools ASSIGN

updated 12.9 years ago by Michael Lawrence ★ 11k • written 12.9 years ago by Ian D. ▴ 70

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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