Biostar Hugene20

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limma microarray pd.hugene.2.0.st hugene20 oligo

6.3 years ago hakimelakhrass • 0

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microarray hugene20 limma oligo

updated 6.3 years ago by Aaron Lun ★ 27k • written 6.3 years ago by hakimelakhrass • 0

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hugene20 heatmap affymetrixchip

updated 7.0 years ago by alakatos ▴ 120 • written 7.0 years ago by kanacska ▴ 10

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microarray annotation hgu133plus2 hugene20

7.2 years ago kanacska ▴ 10

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affy pd.hugene.2.0.st hugene20 annotation microarray

7.2 years ago kanacska ▴ 10

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xps hugene20

updated 7.7 years ago by cstrato ★ 3.9k • written 7.7 years ago by Alison Ziesel ▴ 60

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hugene20 microarray limma limma paired analysis oligo

6.3 years ago hakimelakhrass • 0

7 results • Page 1 of 1

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Answer: Discrepancy between plot colours during exomeCopy tutorial by Michael Love 37k

I’m not sure why the plot looks this way. You may want to look at one sample at a time. Also note there are more developed tools, I haven’t…

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70

that's terrific. thanks. thanks for your comment on `pcoverageByTranscript` function as well. yes, we understand it's for transcript. that…

Answer: Help with constructing design matrix for edgeR/limma by Gordon Smyth 45k

If the infertile subpopulations have different expression profiles then you need ``` design <- model.matrix(~Pathology) ``` and not includ…

Comment: edgeR : results from goana and kegga functions show opposite sig. p-value by sharvari gujja ▴ 30

Thank you so much!

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Hervé Pagès 15k

Hi Jiping, Sorry for the slow response and thanks for providing those details. They allowed me to reproduce the problem and to come up wit…

Votes

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.

DESeq2: likelihood ratio test interpretation, multifactor

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Teacher to Michael Love 37k