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hugene20
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4
votes
10
replies
2.3k
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Limma/oligo always crashing
limma
microarray
pd.hugene.2.0.st
hugene20
oligo
8.2 years ago
hakimelakhrass
• 0
3
votes
10
replies
1.9k
views
Still need help identifying a good workflow for finding DEG in hugene 2.0 st
microarray
hugene20
limma
oligo
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
hakimelakhrass
• 0
2
votes
2
replies
2.8k
views
HuGene 2.0 ST CDF files and xps
xps
hugene20
updated 9.6 years ago by
cstrato
★ 3.9k • written 9.6 years ago by
Alison Ziesel
▴ 60
0
votes
0
replies
2.7k
views
DE analysis pipeline with Hugene 2.0 ST arrays
hugene20
microarray
limma
limma paired analysis
oligo
8.2 years ago
hakimelakhrass
• 0
0
votes
4
replies
2.3k
views
HUgene 2.0 analyses heatmap
hugene20
heatmap
affymetrixchip
updated 8.9 years ago by
alakatos
▴ 130 • written 9.0 years ago by
kanacska
▴ 10
0
votes
3
replies
2.6k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy
pd.hugene.2.0.st
hugene20
annotation
microarray
9.1 years ago
kanacska
▴ 10
0
votes
3
replies
2.4k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray
annotation
hgu133plus2
hugene20
9.1 years ago
kanacska
▴ 10
7 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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