Bioconductor Intensity

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xcms xcmsset intensity

6.7 years ago cpataki • 0

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affy exprs intensity

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by elmira.amiri • 0

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MSnbase chromatograms intensity

updated 5.8 years ago by Laurent Gatto 1.6k • written 5.8 years ago by djshipman2011 ▴ 10

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affy intensity probes

updated 8.7 years ago by James W. MacDonald 68k • written 8.7 years ago by m_punisher6 • 0

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Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Comment: cannot download atena annotation for human by Davide • 0

Hi Robert, I was able to solve the problem. Indeed, it stems from the co-occurrence of two different AnnotationHub available for hg38. …

Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove by macdonaldfrench7286566 • 0

Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by Kateřina • 0

I unfortunately haven't. Non-tidy grammar is fine, but I have wanted to use tidy-only grammar. Thank you nonetheless!

Comment: GAlignments Cigar to GRanges by pineiroalejandro • 0

Wow, so easy! Thanks for your quick reply.

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Answer: GAlignments Cigar to GRanges

When running contrasts, does it use normalized read counts?

Importing Salmon counts with tximport with host and virus genomes

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