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Issue Rcpp mzR

updated 4.0 years ago by Laurent Gatto 1.6k • written 4.0 years ago by Hans • 0

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bug issue tcgabiolinks

updated 8.4 years ago by Tiago C. Silva ▴ 270 • written 8.4 years ago by Marcel Ramos 700

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Comment: Handling Epic Array Data by James W. MacDonald 67k

You can use `model.matrix` to generate the design matrix. See examples in the 'limma User's Guide' or the vignette for the `DMRcate` packag…

Comment: How to get The evolutionary conservation scores for lncRNAs by the phastCons100w by rania.alanany • 0

Thank you for the detailed explanation

Comment: Is it recommended to analyze different tissues together when using edgeR by Lars Roed • 0

Thank you, I'm guessing I could plot the average logCPMs of the tissues against each other to determine if the expression differs, is it po…

Answer: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

It is a matter of judgement. If the regions are very similar in expression and the samples have been collected and processed at the same ti…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thank you so much for the clarification. As you said the replicates are the cells from different plates. For instance, both R01C01 and R05C…

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Answer: Using Affymetrix Custom Array

Answer: Handling Epic Array Data

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Scholar to James W. MacDonald 67k