Bioconductor Kmeans

Showing : kmeans • reset

0

votes

1

reply

1.4k

views

EdgeR clustering differential gene expression consensusclusterplus kmeans

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by anupriya.dalmia • 0

0

votes

4

replies

1.8k

views

kmeans gene expression clustering

7.9 years ago • updated 7.8 years ago Jane Merlevede ▴ 90

0

votes

0

replies

3.5k

views

pheatmap kmeans

7.9 years ago Assa Yeroslaviz ★ 1.5k

2

votes

4

replies

5.0k

views

cluster mclust limma clusplot kmeans

10.1 years ago svlachavas ▴ 840

4 results • Page 1 of 1

Recent ...

Replies

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Awards • All

Popular Question to Robert Castelo ★ 3.4k