Bioconductor Kmeans

Showing : kmeans • reset

0

votes

1

reply

1.4k

views

EdgeR clustering differential gene expression consensusclusterplus kmeans

updated 7.5 years ago by Aaron Lun ★ 29k • written 7.5 years ago by anupriya.dalmia • 0

0

votes

4

replies

1.9k

views

kmeans gene expression clustering

8.0 years ago Jane Merlevede ▴ 90

0

votes

0

replies

3.6k

views

pheatmap kmeans

8.0 years ago Assa Yeroslaviz ★ 1.5k

2

votes

4

replies

5.1k

views

cluster mclust limma clusplot kmeans

10.2 years ago svlachavas ▴ 840

4 results • Page 1 of 1

Recent ...

Replies

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

Awards • All