Bioconductor Limma-trend

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limma voom limma-trend

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by maltethodberg ▴ 180

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2.3k

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tximport limma limma-trend edgeR

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Jenny Drnevich ★ 2.0k

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limma limma-trend voom RNASeq

2.5 years ago • updated 2.4 years ago Tyler Sagendorf ▴ 10

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MNNCorrect scMerge limma-trend

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by hainct • 0

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2.1k

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limma-trend duplicatecorrelation arrayweights limma

updated 6.7 years ago by Gordon Smyth 50k • written 6.7 years ago by maltethodberg ▴ 180

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7.2k

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limma voom limma-trend

updated 6.3 years ago by max.moldovan • 0 • written 7.3 years ago by b.nota ▴ 360

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6.2k

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limma limma voom limma-trend

updated 7.4 years ago by Gordon Smyth 50k • written 7.5 years ago by Nik Tuzov ▴ 80

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1.3k

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limma-trend limma

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Jenny G • 0

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838

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search tximport limma-trend

updated 6.3 years ago by James W. MacDonald 66k • written 6.3 years ago by Jenny Drnevich ★ 2.0k

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932

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limma limma-trend limma-voom

updated 4 months ago by floriandeckert ▴ 30 • written 18 months ago by hainct • 0

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Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…

Comment: ChAMP installation issue by Tahirah • 0

Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k

Yes, you can use `limma`.

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10