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limpa
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1
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244
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Question on processing compound protein groups in limpa
limpa
3 days ago • updated 1 day ago
JKim
• 0
3
votes
2
replies
141
views
Correct usage of limpa for protein input
limpa
written 4 days ago by
miro165sabo
• 0
5
votes
3
replies
236
views
Which preprocessing steps are needed before running limpa?
Normalization
limpa
updated 4 days ago by
Gordon Smyth
53k • written 10 days ago by
miro165sabo
• 0
3
votes
1
reply
129
views
Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
limpa
updated 9 days ago by
Gordon Smyth
53k • written 10 days ago by
miro165sabo
• 0
2
votes
1
reply
242
views
Array weights in dpcDE
limpa
updated 27 days ago by
Gordon Smyth
53k • written 27 days ago by
Matt
• 0
0
votes
2
replies
213
views
Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 28 days ago by
Gordon Smyth
53k • written 4 weeks ago by
DN
• 0
2
votes
6
replies
609
views
limpa analysis advice
limpa
updated 26 days ago by
Gordon Smyth
53k • written 5 weeks ago by
SamGG
▴ 360
0
votes
7
replies
672
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 4 weeks ago by
Gordon Smyth
53k • written 5 weeks ago by
emily.wolfrum
• 0
0
votes
2
replies
433
views
Combining two proteomics datasets with limpa
limpa
ProteomicsWorkflow
limma
6 weeks ago • updated 4 weeks ago
Andrew Pattison
• 0
0
votes
1
reply
332
views
PTM analysis in LIMPA
limpa
updated 5 weeks ago by
Gordon Smyth
53k • written 11 weeks ago by
Diego FGR
• 0
1
vote
4
replies
578
views
Large logFC but somewhat high FDR
limpa
3 months ago • updated 11 weeks ago
JKim
• 0
0
votes
2
replies
346
views
limpa - drivers for unusually high standard error?
limpa
updated 3 months ago by
Gordon Smyth
53k • written 3 months ago by
Julia Broadbent
• 0
2
votes
2
replies
351
views
Post translational modifications and phosphoproteomics in limpa?
limpa
updated 5 weeks ago by
Gordon Smyth
53k • written 3 months ago by
james.eapen
• 0
0
votes
2
replies
509
views
Help with defining groups
limpa
updated 5 weeks ago by
Gordon Smyth
53k • written 4 months ago by
Phinney, Brett
▴ 10
3
votes
1
reply
549
views
Limpa Pipeline Order
limma
limpa
updated 6 months ago by
Gordon Smyth
53k • written 6 months ago by
abadgerw
• 0
0
votes
2
replies
1.6k
views
Limma trend with limpa
limpa
limma
trend
updated 9 months ago by
Gordon Smyth
53k • written 9 months ago by
Alejandro
• 0
16 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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