Showing : lumi • reset
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lumi, lumiHumanV2 and GOstats
GO lumiHumanV2 GOstats lumi GO lumiHumanV2 GOstats lumi
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 270
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4
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1.6k
views
lumi: target ids versus probe ids?
lumi lumi
updated 17.4 years ago by ▴ 320 • written 17.4 years ago by ▴ 320
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884
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warning message of lumiR
Microarray Annotation probe convert lumi Microarray Annotation probe convert lumi
17.4 years ago Pan Du ★ 1.2k
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1
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898
views
lumi: error when plotting CV for lumi expression set
lumi lumi
updated 17.4 years ago by 21k • written 17.4 years ago by ▴ 370
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0
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815
views
how to cite "lumi"?
Normalization lumi Normalization lumi
17.4 years ago Pan Du ★ 1.2k
0
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1
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1.0k
views
lumi annotation for Mouse Ref8 v1.1
lumi lumi
updated 17.4 years ago by ★ 1.2k • written 17.4 years ago by ▴ 70
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1
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1.4k
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new lumi and miRNA array data
Microarray Normalization lumi BRAIN Microarray Normalization lumi BRAIN
updated 17.4 years ago by ★ 13k • written 17.4 years ago by ▴ 830
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1
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1.6k
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About Illumina annotation packages lumixxxAll.db
Annotation lumiMouseV1 probe convert lumi Annotation lumiMouseV1 probe convert lumi
17.4 years ago Pan Du ★ 1.2k
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1.0k
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Illumina annotation human v3
Annotation lumi Annotation lumi
17.4 years ago Pan Du ★ 1.2k
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751
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info su illumina
Genetics Annotation GO lumi Genetics Annotation GO lumi
17.5 years ago Pan Du ★ 1.2k
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0
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1.2k
views
how to cite "lumi"?
Microarray Annotation Normalization Cancer lumi Microarray Annotation Normalization Cancer
17.5 years ago Pan Du ★ 1.2k
0
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1
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1.7k
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Lumi: filtering and batch effects (combat)
Normalization lumi Normalization lumi
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ▴ 30
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1.2k
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About Lumi nuID NAs
Annotation lumiMouseV1 probe lumi Annotation lumiMouseV1 probe lumi
17.6 years ago Pan Du ★ 1.2k
0
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1
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986
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Lumi package: control data for background correction
lumi lumi
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 30
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4
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2.0k
views
About beadarray normaliseIllumina() warning messages
Normalization GO safe beadarray lumi Normalization GO safe beadarray lumi
updated 17.7 years ago by ▴ 410 • written 17.8 years ago by ▴ 150
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0
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1.0k
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another quick question about Illumina annotation
Annotation AnnBuilder lumi Annotation AnnBuilder lumi
17.8 years ago Pan Du ★ 1.2k
0
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650
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questions on lumi
graph lumi graph lumi
17.8 years ago Pan Du ★ 1.2k
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2
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1.0k
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About subsampling of VST in lumi
Cancer lumi Cancer lumi
updated 17.8 years ago by ▴ 50 • written 17.8 years ago by ★ 1.2k
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4
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1.5k
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NA geneSymbol with lumi
Microarray lumi Microarray lumi
17.9 years ago Sebastien Gerega ▴ 370
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6
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1.9k
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Illumina Beadarray negative data
beadarray lumi beadarray lumi
updated 17.9 years ago by 21k • written 17.9 years ago by ▴ 640
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5
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1.4k
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lumi: how is the controlData to be read and used?
probe lumi probe lumi
updated 17.9 years ago by 53k • written 18.0 years ago by ★ 1.2k
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968
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lumi: how is the controlData to be read and used?
probe lumi probe lumi
18.0 years ago Gordon Smyth 53k
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0
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848
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lumi::lumiR parseColumnName behaves unexpectedly
lumi lumi
18.0 years ago Gordon Smyth 53k
0
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4
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1.4k
views
illumina annotation package error
Annotation illuminaHumanv2 lumi Annotation illuminaHumanv2 lumi
updated 18.0 years ago by ▴ 280 • written 18.0 years ago by ▴ 220
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1
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1.1k
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Error loading Illumina data LumiR
lumi lumi
18.1 years ago Johnstone, Alice ▴ 410
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1
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1.1k
views
lty argument not recognised in plot function]
lumi lumi
updated 18.1 years ago by ▴ 410 • written 18.1 years ago by ★ 1.2k
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1
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1.3k
views
RNA degradation for Illumina
affy beadarray lumi affy beadarray lumi
updated 18.1 years ago by ★ 3.6k • written 18.1 years ago by ▴ 110
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1.2k
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Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
18.2 years ago Johnstone, Alice ▴ 410
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1
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1.1k
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Problems with lumiR/lumiMouseV1
Annotation lumiMouseV1 annotate lumi Annotation lumiMouseV1 annotate lumi
18.2 years ago Cei Abreu-Goodger ▴ 830
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6
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1.7k
views
lumiT VST error
lumi lumi
updated 18.2 years ago by ★ 1.2k • written 18.2 years ago by ▴ 40
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5
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1.8k
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Manufacturer ids in lumiHumanV1
Annotation lumiHumanV1 annotate lumi Annotation lumiHumanV1 annotate lumi
updated 18.3 years ago by ★ 1.2k • written 18.3 years ago by ▴ 830
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0
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1.0k
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sampleinfo and lumiN of lumi package
Normalization lumi Normalization lumi
18.3 years ago Pan Du ★ 1.2k
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0
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728
views
Another lumi question (sample info)
lumi lumi
18.3 years ago Michal Blazejczyk ▴ 320
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0
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822
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lumi question, and a bug
lumi lumi
18.3 years ago Michal Blazejczyk ▴ 320
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0
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951
views
Bioconductor Digest, Vol 52, Issue 18
Normalization lumi Normalization lumi
18.3 years ago Simon Lin ▴ 270
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1
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916
views
method "[" for class LumiBatch
lumi lumi
updated 18.3 years ago by ★ 1.2k • written 18.4 years ago by ▴ 160
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1
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1.1k
views
Workflow question in lumi
Microarray Normalization GeneTraffic lumi Microarray Normalization GeneTraffic lumi
updated 18.4 years ago by ★ 1.2k • written 18.4 years ago by ▴ 30
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0
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1.1k
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Illumina BeadArray Annotation
Annotation Cancer lumiMouseV1 lumi trigger Annotation Cancer lumiMouseV1 lumi trigger
18.4 years ago Simon Lin ▴ 270
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2
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1.1k
views
Problem in lumi
lumi lumi
updated 18.4 years ago by ★ 1.2k • written 18.4 years ago by ▴ 30
0
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4
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1.3k
views
GOstats After Running Lumi
Microarray lumi Microarray lumi
18.4 years ago Shawn Westaway ▴ 70
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1.1k
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problems with lumi
Microarray Normalization lumi Microarray Normalization lumi
18.6 years ago Anand C. Patel ▴ 100
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0
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1.8k
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Illumina - Beadarray - Limma
Microarray Normalization limma PROcess lumi Microarray Normalization limma PROcess lumi
18.6 years ago Simon Lin ▴ 270
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0
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1.2k
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What is a good method for analyzing differential expression from Illumina BeadStudio summary data?
Normalization GO affy vsn limma beadarray lumi Normalization GO affy vsn limma lumi
18.6 years ago Gordon Smyth 53k
243 results • Page 5 of 5
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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