Showing : lumi • reset
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2
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1.2k
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lumi, lumiHumanV2 and GOstats
GO lumiHumanV2 GOstats lumi GO lumiHumanV2 GOstats lumi
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 270
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4
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1.7k
views
lumi: target ids versus probe ids?
lumi lumi
updated 17.5 years ago by ▴ 320 • written 17.5 years ago by ▴ 320
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0
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911
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warning message of lumiR
Microarray Annotation probe convert lumi Microarray Annotation probe convert lumi
17.6 years ago Pan Du ★ 1.2k
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1
reply
918
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lumi: error when plotting CV for lumi expression set
lumi lumi
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 370
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0
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831
views
how to cite "lumi"?
Normalization lumi Normalization lumi
17.6 years ago Pan Du ★ 1.2k
0
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1
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1.0k
views
lumi annotation for Mouse Ref8 v1.1
lumi lumi
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ▴ 70
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1
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1.4k
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new lumi and miRNA array data
Microarray Normalization lumi BRAIN Microarray Normalization lumi BRAIN
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 830
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1
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1.6k
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About Illumina annotation packages lumixxxAll.db
Annotation lumiMouseV1 probe convert lumi Annotation lumiMouseV1 probe convert lumi
17.6 years ago Pan Du ★ 1.2k
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0
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1.1k
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Illumina annotation human v3
Annotation lumi Annotation lumi
17.6 years ago Pan Du ★ 1.2k
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0
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775
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info su illumina
Genetics Annotation GO lumi Genetics Annotation GO lumi
17.6 years ago Pan Du ★ 1.2k
0
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0
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1.2k
views
how to cite "lumi"?
Microarray Annotation Normalization Cancer lumi Microarray Annotation Normalization Cancer
17.7 years ago Pan Du ★ 1.2k
0
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1
reply
1.7k
views
Lumi: filtering and batch effects (combat)
Normalization lumi Normalization lumi
updated 17.8 years ago by ★ 1.2k • written 17.8 years ago by ▴ 30
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0
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1.2k
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About Lumi nuID NAs
Annotation lumiMouseV1 probe lumi Annotation lumiMouseV1 probe lumi
17.8 years ago Pan Du ★ 1.2k
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1
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1.0k
views
Lumi package: control data for background correction
lumi lumi
updated 17.9 years ago by ★ 1.2k • written 17.9 years ago by ▴ 30
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4
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2.0k
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About beadarray normaliseIllumina() warning messages
Normalization GO safe beadarray lumi Normalization GO safe beadarray lumi
updated 17.9 years ago by ▴ 410 • written 17.9 years ago by ▴ 150
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0
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1.1k
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another quick question about Illumina annotation
Annotation AnnBuilder lumi Annotation AnnBuilder lumi
17.9 years ago Pan Du ★ 1.2k
0
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0
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671
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questions on lumi
graph lumi graph lumi
18.0 years ago Pan Du ★ 1.2k
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2
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1.1k
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About subsampling of VST in lumi
Cancer lumi Cancer lumi
updated 18.0 years ago by ▴ 50 • written 18.0 years ago by ★ 1.2k
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4
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1.5k
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NA geneSymbol with lumi
Microarray lumi Microarray lumi
18.1 years ago Sebastien Gerega ▴ 370
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6
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1.9k
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Illumina Beadarray negative data
beadarray lumi beadarray lumi
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 640
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5
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1.5k
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lumi: how is the controlData to be read and used?
probe lumi probe lumi
updated 18.1 years ago by 53k • written 18.1 years ago by ★ 1.2k
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992
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lumi: how is the controlData to be read and used?
probe lumi probe lumi
18.1 years ago Gordon Smyth 53k
0
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0
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866
views
lumi::lumiR parseColumnName behaves unexpectedly
lumi lumi
18.1 years ago Gordon Smyth 53k
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1
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1.0k
views
lumi: LumiBatch slots don't match documentation
lumi
18.1 years ago • updated 10 days ago Gordon Smyth 53k
0
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4
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1.5k
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illumina annotation package error
Annotation illuminaHumanv2 lumi Annotation illuminaHumanv2 lumi
updated 18.1 years ago by ▴ 280 • written 18.1 years ago by ▴ 220
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1
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1.1k
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Error loading Illumina data LumiR
lumi lumi
18.2 years ago Johnstone, Alice ▴ 410
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1
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1.1k
views
lty argument not recognised in plot function]
lumi lumi
updated 18.2 years ago by ▴ 410 • written 18.3 years ago by ★ 1.2k
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1
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1.3k
views
RNA degradation for Illumina
affy beadarray lumi affy beadarray lumi
updated 18.3 years ago by ★ 3.6k • written 18.3 years ago by ▴ 110
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0
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1.3k
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Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
18.3 years ago Johnstone, Alice ▴ 410
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1
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1.1k
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Problems with lumiR/lumiMouseV1
Annotation lumiMouseV1 annotate lumi Annotation lumiMouseV1 annotate lumi
18.3 years ago Cei Abreu-Goodger ▴ 830
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6
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1.7k
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lumiT VST error
lumi lumi
updated 18.4 years ago by ★ 1.2k • written 18.4 years ago by ▴ 40
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5
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1.8k
views
Manufacturer ids in lumiHumanV1
Annotation lumiHumanV1 annotate lumi Annotation lumiHumanV1 annotate lumi
updated 18.4 years ago by ★ 1.2k • written 18.4 years ago by ▴ 830
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0
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1.1k
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sampleinfo and lumiN of lumi package
Normalization lumi Normalization lumi
18.5 years ago Pan Du ★ 1.2k
0
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0
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745
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Another lumi question (sample info)
lumi lumi
18.5 years ago Michal Blazejczyk ▴ 320
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0
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844
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lumi question, and a bug
lumi lumi
18.5 years ago Michal Blazejczyk ▴ 320
0
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0
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990
views
Bioconductor Digest, Vol 52, Issue 18
Normalization lumi Normalization lumi
18.5 years ago Simon Lin ▴ 270
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1
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946
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method "[" for class LumiBatch
lumi lumi
updated 18.5 years ago by ★ 1.2k • written 18.5 years ago by ▴ 160
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1
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1.1k
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Workflow question in lumi
Microarray Normalization GeneTraffic lumi Microarray Normalization GeneTraffic lumi
updated 18.5 years ago by ★ 1.2k • written 18.5 years ago by ▴ 30
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0
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1.1k
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Illumina BeadArray Annotation
Annotation Cancer lumiMouseV1 lumi trigger Annotation Cancer lumiMouseV1 lumi trigger
18.5 years ago Simon Lin ▴ 270
0
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2
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1.1k
views
Problem in lumi
lumi lumi
updated 18.6 years ago by ★ 1.2k • written 18.6 years ago by ▴ 30
0
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4
replies
1.4k
views
GOstats After Running Lumi
Microarray lumi Microarray lumi
18.6 years ago Shawn Westaway ▴ 70
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0
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1.1k
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problems with lumi
Microarray Normalization lumi Microarray Normalization lumi
18.8 years ago Anand C. Patel ▴ 100
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0
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1.8k
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Illumina - Beadarray - Limma
Microarray Normalization limma PROcess lumi Microarray Normalization limma PROcess lumi
18.8 years ago Simon Lin ▴ 270
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0
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1.2k
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What is a good method for analyzing differential expression from Illumina BeadStudio summary data?
Normalization GO affy vsn limma beadarray lumi Normalization GO affy vsn limma lumi
18.8 years ago Gordon Smyth 53k
244 results • Page 5 of 5
Recent ...
Replies
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
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