Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
lumi
•
reset
0
votes
0
replies
1.3k
views
obtaining GOID from nuID
GO
goTools
lumi
GO
goTools
lumi
15.9 years ago
Md.Mamunur Rashid
▴ 260
1
vote
2
replies
1.9k
views
Problems compiling lumi on Solaris Sparc and R 2.9.0
beadarray
lumi
beadarray
lumi
updated 15.9 years ago by
Seth Falcon
★ 7.4k • written 15.9 years ago by
ngrundma
▴ 20
0
votes
1
reply
1.6k
views
problem illumina annotation with lumi
Microarray
annotate
convert
lumi
Microarray
annotate
convert
lumi
16.0 years ago
Md.Mamunur Rashid
▴ 260
0
votes
3
replies
1.3k
views
assist in constructing a design matrix & contrast matrix for Illumina microarray
limma
lumi
limma
lumi
updated 16.1 years ago by
James W. MacDonald
68k • written 16.1 years ago by
Maria Dolores Serafica
▴ 30
0
votes
0
replies
851
views
lmma for lumi- request for help design matrix/contrast matrix
limma
lumi
limma
lumi
16.1 years ago
Maria Dolores Serafica
▴ 30
0
votes
0
replies
871
views
limma for lumi- request help design/contrast matrix
limma
lumi
limma
lumi
16.1 years ago
Maria Dolores Serafica
▴ 30
0
votes
0
replies
3.6k
views
lumi export
lumi
lumi
16.1 years ago
Mervi Alanne
▴ 70
0
votes
0
replies
809
views
pairs function and diagonal limits
lumi
lumi
16.1 years ago
Mervi Alanne
▴ 70
0
votes
0
replies
877
views
lumi package, 1.10.2 version but still has this problem
lumi
lumi
16.2 years ago
Weiwei Shi
★ 1.2k
0
votes
0
replies
1.3k
views
lumi package
Cancer
lumi
BUS
Cancer
lumi
BUS
16.2 years ago
Weiwei Shi
★ 1.2k
0
votes
0
replies
857
views
Changes in lumi in 2.9.2?
lumi
lumi
16.2 years ago
Michal Blazejczyk
▴ 320
0
votes
2
replies
1.3k
views
lumi and Affy bgadjust
Normalization
Cancer
lumi
Normalization
Cancer
lumi
updated 16.2 years ago by
parantu shah
▴ 10 • written 16.2 years ago by
Pan Du
★ 1.2k
0
votes
7
replies
2.7k
views
analyzing HumanHT12 with lumi
Microarray
Normalization
probe
lumi
Microarray
Normalization
probe
lumi
updated 16.2 years ago by
die_stevie@web.de
▴ 50 • written 16.2 years ago by
Stefanie Figura
▴ 30
0
votes
1
reply
1.7k
views
Creating LumiBatch object from ExpressionSet
Microarray
probe
genefilter
lumi
Microarray
probe
genefilter
lumi
updated 16.2 years ago by
Md.Mamunur Rashid
▴ 260 • written 16.2 years ago by
Pan Du
★ 1.2k
0
votes
0
replies
1.6k
views
[Fwd: problem : Detection-p.value column in Illumina HumanHT12 data]
Microarray
probe
genefilter
limma
lumi
Microarray
probe
genefilter
limma
lumi
16.2 years ago
Md.Mamunur Rashid
▴ 260
0
votes
0
replies
1.3k
views
Fwd: analyzing HumanHT12 with lumi
Microarray
Normalization
probe
lumi
Microarray
Normalization
probe
lumi
16.2 years ago
amit mandal
▴ 140
0
votes
0
replies
1.2k
views
limma for identifying differentially expressed genes from illumina data
Microarray
Normalization
probe
limma
lumi
Microarray
Normalization
probe
limma
lumi
16.3 years ago
Wei Shi
★ 3.6k
0
votes
2
replies
1.5k
views
limma for identifying differentially expressed genes from illumina data
Microarray
limma
lumi
Microarray
limma
lumi
updated 16.3 years ago by
Wei Shi
★ 3.6k • written 16.3 years ago by
Md.Mamunur Rashid
▴ 260
0
votes
1
reply
1.0k
views
replicating BeadStudio background correction in lumi package
lumi
lumi
16.3 years ago
amit mandal
▴ 140
0
votes
0
replies
615
views
Using bgAdjust.affy for lumi
lumi
lumi
16.4 years ago
Michal Blazejczyk
▴ 320
0
votes
0
replies
678
views
Illumina vs Affy chips
affy
beadarray
lumi
xps
affy
beadarray
lumi
xps
16.5 years ago
Sean Davis
21k
0
votes
0
replies
817
views
Detection with Lumi package VS Detection pvalue in illumina
lumi
lumi
16.5 years ago
Mohamed lajnef
▴ 40
0
votes
0
replies
1.1k
views
Lumi: GenomStudio vs BeadStudio
GO
lumi
GO
lumi
16.6 years ago
Ingrid H. G. Østensen
▴ 700
0
votes
0
replies
756
views
Problem with subset in beadarray
beadarray
lumi
beadarray
lumi
16.6 years ago
Julien Bauer
▴ 10
0
votes
1
reply
1.6k
views
Lumi normalization and VST help
Microarray
Normalization
lumi
Microarray
Normalization
lumi
updated 16.7 years ago by
Paul Leo
▴ 970 • written 16.7 years ago by
Christina Markunas
▴ 20
0
votes
0
replies
874
views
Missing code in Lumi package Vignette
lumi
lumi
16.8 years ago
Pan Du
★ 1.2k
0
votes
16
replies
3.6k
views
About GEO submission of Illumina data by lumi
lumi
lumi
updated 16.8 years ago by
Pan Du
★ 1.2k • written 16.8 years ago by
affy snp
▴ 640
0
votes
0
replies
914
views
using "lumi" package to read miRNA data
miRNA
Annotation
lumi
miRNA
Annotation
lumi
16.8 years ago
Nusrat Rabbee
▴ 10
0
votes
0
replies
973
views
About GEO submission of Illumina data
Annotation
probe
lumi
Annotation
probe
lumi
16.9 years ago
Pan Du
★ 1.2k
0
votes
7
replies
2.5k
views
Illumina annotation packages discrepancy
Annotation
illuminaHumanv2
probe
lumi
Annotation
illuminaHumanv2
probe
lumi
updated 17.0 years ago by
Lynn Amon
▴ 280 • written 17.0 years ago by
Pan Du
★ 1.2k
0
votes
0
replies
1.1k
views
Illumina annotation packages discrepancy
Annotation
probe
lumi
Annotation
probe
lumi
17.0 years ago
Renaud Gaujoux
▴ 170
0
votes
1
reply
1.8k
views
GSEABase
GO
illuminaHumanv2
lumi
GSEABase
GO
illuminaHumanv2
lumi
GSEABase
updated 17.0 years ago by
Martin Morgan
25k • written 17.0 years ago by
John Lande
▴ 280
0
votes
0
replies
820
views
For lumi package users: Change the names of Illumina ID mapping packages
Annotation
lumi
Annotation
lumi
17.1 years ago
Pan Du
★ 1.2k
0
votes
0
replies
1.0k
views
lumi ID mapping issues
Annotation
probe
PROcess
lumi
Annotation
probe
PROcess
lumi
17.1 years ago
Pan Du
★ 1.2k
0
votes
5
replies
1.7k
views
Lumi Error
probe
lumi
probe
lumi
updated 17.1 years ago by
Pan Du
★ 1.2k • written 17.1 years ago by
John Lande
▴ 280
0
votes
0
replies
712
views
Possible problem with lumi function addControlData2lumi and proposed solution
Annotation
lumi
Annotation
lumi
17.1 years ago
Pan Du
★ 1.2k
0
votes
0
replies
1.0k
views
Possible problem with lumi function addControlData2lumi and proposed solution
Annotation
lumi
Annotation
lumi
17.1 years ago
Davis, Wade
▴ 350
0
votes
1
reply
1.3k
views
Illumina annotation and lumi
Annotation
lumi
Annotation
lumi
updated 17.1 years ago by
Kristen K Dang
▴ 50 • written 17.1 years ago by
Dan Swan
▴ 50
0
votes
1
reply
1.2k
views
Problem with analysis of paired data using Illumina arrays and the Lumi and limma packages
probe
siggenes
lumi
probe
siggenes
lumi
updated 17.2 years ago by
James W. MacDonald
68k • written 17.2 years ago by
Groeneweg M PATH
▴ 10
0
votes
1
reply
914
views
merging lumibatch objects
lumi
lumi
updated 17.2 years ago by
Pan Du
★ 1.2k • written 17.2 years ago by
LUIS F MENEZES
▴ 60
0
votes
3
replies
1.8k
views
How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?
Annotation
GO
convert
lumi
Annotation
GO
convert
lumi
updated 17.2 years ago by
Pan Du
★ 1.2k • written 17.2 years ago by
Elliot Kleiman
▴ 150
0
votes
2
replies
1.2k
views
reasonable Illumina hyperG test
Pathways
lumi
Pathways
lumi
updated 17.3 years ago by
James W. MacDonald
68k • written 17.3 years ago by
Sebastien Gerega
▴ 370
0
votes
0
replies
796
views
Questions regarding lumi
lumi
lumi
17.3 years ago
Ingrid H. G. Østensen
▴ 700
0
votes
2
replies
1.4k
views
lumi question (About BeadStudio output columns)
Microarray
lumi
Microarray
lumi
updated 17.4 years ago by
Alison Ziesel
▴ 60 • written 17.4 years ago by
Pan Du
★ 1.2k
0
votes
0
replies
1.0k
views
error using lumiR * correction
Annotation
lumi
Annotation
lumi
17.4 years ago
Kristen K Dang
▴ 50
0
votes
0
replies
943
views
error using lumiR
PROcess
lumi
PROcess
lumi
17.4 years ago
Kristen K Dang
▴ 50
0
votes
2
replies
1.6k
views
ENTREZ identifiers for PGSEA
GO
lumi
PGSEA
GO
lumi
PGSEA
updated 17.4 years ago by
Dykema, Karl
▴ 90 • written 17.4 years ago by
Sebastien Gerega
▴ 370
0
votes
0
replies
1.0k
views
Change of default normalization method in lumiN ( lumi package )
Normalization
probe
lumi
Normalization
probe
lumi
17.4 years ago
Pan Du
★ 1.2k
0
votes
0
replies
890
views
lumi annotation package
Annotation
lumiHumanV1
lumiMouseV1
lumiHumanV2
probe
lumi
Annotation
lumiHumanV1
probe
17.5 years ago
Pan Du
★ 1.2k
0
votes
0
replies
749
views
Issues with lumiMouseAll.db vs lumiMouseV1
Annotation
probe
lumi
Annotation
probe
lumi
17.5 years ago
Cei Abreu-Goodger
▴ 830
244 results • Page
4 of 5
Recent ...
Replies
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards
• All
Popular Question
to
Hervé Pagès
16k
Popular Question
to
jared.andrews07
▴ 30
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.2k
Popular Question
to
Gordon Smyth
53k
Locations
• All
United States,
18 minutes ago
Seattle, WA, United States,
22 minutes ago
The city by the bay,
33 minutes ago
WEHI, Melbourne, Australia,
45 minutes ago
Seattle, WA,
1 hour ago
Traffic: 699 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6