Showing : lumi • reset
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obtaining GOID from nuID
GO goTools lumi GO goTools lumi
15.9 years ago Md.Mamunur Rashid ▴ 260
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2
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1.9k
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Problems compiling lumi on Solaris Sparc and R 2.9.0
beadarray lumi beadarray lumi
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ▴ 20
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1
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1.6k
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problem illumina annotation with lumi
Microarray annotate convert lumi Microarray annotate convert lumi
16.0 years ago Md.Mamunur Rashid ▴ 260
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3
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1.3k
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assist in constructing a design matrix & contrast matrix for Illumina microarray
limma lumi limma lumi
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 30
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0
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851
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lmma for lumi- request for help design matrix/contrast matrix
limma lumi limma lumi
16.1 years ago Maria Dolores Serafica ▴ 30
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0
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871
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limma for lumi- request help design/contrast matrix
limma lumi limma lumi
16.1 years ago Maria Dolores Serafica ▴ 30
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3.6k
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lumi export
lumi lumi
16.1 years ago Mervi Alanne ▴ 70
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809
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pairs function and diagonal limits
lumi lumi
16.1 years ago Mervi Alanne ▴ 70
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0
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877
views
lumi package, 1.10.2 version but still has this problem
lumi lumi
16.2 years ago Weiwei Shi ★ 1.2k
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1.3k
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lumi package
Cancer lumi BUS Cancer lumi BUS
16.2 years ago Weiwei Shi ★ 1.2k
0
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0
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857
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Changes in lumi in 2.9.2?
lumi lumi
16.2 years ago Michal Blazejczyk ▴ 320
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2
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1.3k
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lumi and Affy bgadjust
Normalization Cancer lumi Normalization Cancer lumi
updated 16.2 years ago by ▴ 10 • written 16.2 years ago by ★ 1.2k
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7
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2.7k
views
analyzing HumanHT12 with lumi
Microarray Normalization probe lumi Microarray Normalization probe lumi
updated 16.2 years ago by ▴ 50 • written 16.2 years ago by ▴ 30
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1
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1.7k
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Creating LumiBatch object from ExpressionSet
Microarray probe genefilter lumi Microarray probe genefilter lumi
updated 16.2 years ago by ▴ 260 • written 16.2 years ago by ★ 1.2k
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[Fwd: problem : Detection-p.value column in Illumina HumanHT12 data]
Microarray probe genefilter limma lumi Microarray probe genefilter limma lumi
16.2 years ago Md.Mamunur Rashid ▴ 260
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1.3k
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Fwd: analyzing HumanHT12 with lumi
Microarray Normalization probe lumi Microarray Normalization probe lumi
16.2 years ago amit mandal ▴ 140
0
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0
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1.2k
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limma for identifying differentially expressed genes from illumina data
Microarray Normalization probe limma lumi Microarray Normalization probe limma lumi
16.3 years ago Wei Shi ★ 3.6k
0
votes
2
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1.5k
views
limma for identifying differentially expressed genes from illumina data
Microarray limma lumi Microarray limma lumi
updated 16.3 years ago by ★ 3.6k • written 16.3 years ago by ▴ 260
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1
reply
1.0k
views
replicating BeadStudio background correction in lumi package
lumi lumi
16.3 years ago amit mandal ▴ 140
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0
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615
views
Using bgAdjust.affy for lumi
lumi lumi
16.4 years ago Michal Blazejczyk ▴ 320
0
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0
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678
views
Illumina vs Affy chips
affy beadarray lumi xps affy beadarray lumi xps
16.5 years ago Sean Davis 21k
0
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0
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817
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Detection with Lumi package VS Detection pvalue in illumina
lumi lumi
16.5 years ago Mohamed lajnef ▴ 40
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0
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1.1k
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Lumi: GenomStudio vs BeadStudio
GO lumi GO lumi
16.6 years ago Ingrid H. G. Østensen ▴ 700
0
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0
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756
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Problem with subset in beadarray
beadarray lumi beadarray lumi
16.6 years ago Julien Bauer ▴ 10
0
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1
reply
1.6k
views
Lumi normalization and VST help
Microarray Normalization lumi Microarray Normalization lumi
updated 16.7 years ago by ▴ 970 • written 16.7 years ago by ▴ 20
0
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0
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874
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Missing code in Lumi package Vignette
lumi lumi
16.8 years ago Pan Du ★ 1.2k
0
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16
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3.6k
views
About GEO submission of Illumina data by lumi
lumi lumi
updated 16.8 years ago by ★ 1.2k • written 16.8 years ago by ▴ 640
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0
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914
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using "lumi" package to read miRNA data
miRNA Annotation lumi miRNA Annotation lumi
16.8 years ago Nusrat Rabbee ▴ 10
0
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0
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973
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About GEO submission of Illumina data
Annotation probe lumi Annotation probe lumi
16.9 years ago Pan Du ★ 1.2k
0
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7
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2.5k
views
Illumina annotation packages discrepancy
Annotation illuminaHumanv2 probe lumi Annotation illuminaHumanv2 probe lumi
updated 17.0 years ago by ▴ 280 • written 17.0 years ago by ★ 1.2k
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1.1k
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Illumina annotation packages discrepancy
Annotation probe lumi Annotation probe lumi
17.0 years ago Renaud Gaujoux ▴ 170
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1
reply
1.8k
views
GSEABase
GO illuminaHumanv2 lumi GSEABase GO illuminaHumanv2 lumi GSEABase
updated 17.0 years ago by 25k • written 17.0 years ago by ▴ 280
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0
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820
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For lumi package users: Change the names of Illumina ID mapping packages
Annotation lumi Annotation lumi
17.1 years ago Pan Du ★ 1.2k
0
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0
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1.0k
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lumi ID mapping issues
Annotation probe PROcess lumi Annotation probe PROcess lumi
17.1 years ago Pan Du ★ 1.2k
0
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5
replies
1.7k
views
Lumi Error
probe lumi probe lumi
updated 17.1 years ago by ★ 1.2k • written 17.1 years ago by ▴ 280
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0
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712
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Possible problem with lumi function addControlData2lumi and proposed solution
Annotation lumi Annotation lumi
17.1 years ago Pan Du ★ 1.2k
0
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0
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1.0k
views
Possible problem with lumi function addControlData2lumi and proposed solution
Annotation lumi Annotation lumi
17.1 years ago Davis, Wade ▴ 350
0
votes
1
reply
1.3k
views
Illumina annotation and lumi
Annotation lumi Annotation lumi
updated 17.1 years ago by ▴ 50 • written 17.1 years ago by ▴ 50
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1
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1.2k
views
Problem with analysis of paired data using Illumina arrays and the Lumi and limma packages
probe siggenes lumi probe siggenes lumi
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 10
0
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1
reply
914
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merging lumibatch objects
lumi lumi
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 60
0
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3
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1.8k
views
How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?
Annotation GO convert lumi Annotation GO convert lumi
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 150
0
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2
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1.2k
views
reasonable Illumina hyperG test
Pathways lumi Pathways lumi
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 370
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0
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796
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Questions regarding lumi
lumi lumi
17.3 years ago Ingrid H. G. Østensen ▴ 700
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2
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1.4k
views
lumi question (About BeadStudio output columns)
Microarray lumi Microarray lumi
updated 17.4 years ago by ▴ 60 • written 17.4 years ago by ★ 1.2k
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1.0k
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error using lumiR * correction
Annotation lumi Annotation lumi
17.4 years ago Kristen K Dang ▴ 50
0
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0
replies
943
views
error using lumiR
PROcess lumi PROcess lumi
17.4 years ago Kristen K Dang ▴ 50
0
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2
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1.6k
views
ENTREZ identifiers for PGSEA
GO lumi PGSEA GO lumi PGSEA
updated 17.4 years ago by ▴ 90 • written 17.4 years ago by ▴ 370
0
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0
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1.0k
views
Change of default normalization method in lumiN ( lumi package )
Normalization probe lumi Normalization probe lumi
17.4 years ago Pan Du ★ 1.2k
0
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0
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890
views
lumi annotation package
Annotation lumiHumanV1 lumiMouseV1 lumiHumanV2 probe lumi Annotation lumiHumanV1 probe
17.5 years ago Pan Du ★ 1.2k
0
votes
0
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749
views
Issues with lumiMouseAll.db vs lumiMouseV1
Annotation probe lumi Annotation probe lumi
17.5 years ago Cei Abreu-Goodger ▴ 830
244 results • Page 4 of 5
Recent ...
Replies
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Hervé Pagès 16k
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Popular Question to James W. MacDonald 68k
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Popular Question to Gordon Smyth 53k
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