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lumiHumanIDMapping
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1.7k
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Error in the Illumina ID to Gene Symbol mapping through lumi package
lumi
illuminahumanv3
lumihumanidmapping
8.8 years ago
gokcen.eraslan
▴ 10
0
votes
2
replies
1.5k
views
lumiHumanIDMapping/lumiHumanAll for R-3.1.2
lumi
lumiHumanIDMapping
lumiHumanAll
9.3 years ago
Frederico Moraes Ferreira
▴ 100
1
vote
2
replies
1.4k
views
Annotation issues with illumina microarray preprocessing with limma
limma
illumina human ht-12 v4
annotationdbi
lumihumanAll.db
lumihumanidmapping
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.0k
views
no chip information in lumiHumanIDMapping?
lumi
lumihumanidmapping
8.5 years ago
aush
▴ 40
0
votes
0
replies
906
views
"Error: object 'nuID' not found" error when using `returnAllMatches=TRUE` in `IlluminaID2nuID()`
lumi
lumihumanidmapping
8.5 years ago
aush
▴ 40
5 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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