updated 10.2 years ago by
Mark Cowley
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written 10.2 years ago by
willj
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Comment: Large logFC but somewhat high FDR
by
JKim
•
0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
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10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be:
```
hist(fit2$p.value[,"KO_vs_WT"])
```
Answer: p.adjust BH Question
by
Gordon Smyth
53k
Duplicate of https://support.bioconductor.org/p/41077/
Answer: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
Glad you're getting good use out of the package.
The results that you show seem pretty much as one would expect, with nothing surprising. …
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