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made4
•
reset
0
votes
2
replies
925
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bug in overview function of made4
Biobase
affy
marray
convert
made4
Biobase
affy
marray
convert
made4
updated 18.4 years ago by
Aedin Culhane
▴ 510 • written 18.4 years ago by
Jenny Drnevich
★ 2.2k
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival
hu6800
cdf
probe
Biobase
genefilter
reposTools
affy
affydata
limma
gcrma
made4
updated 18.1 years ago by
Ken Simpson
▴ 70 • written 18.1 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
897
views
Analysing categorical CGH data
Clustering
Cancer
CGH
made4
Clustering
Cancer
CGH
made4
17.8 years ago
Richard Birnie
▴ 10
0
votes
0
replies
1.1k
views
Analysing categorical CGH data
Clustering
Cancer
CGH
GLAD
made4
Clustering
Cancer
CGH
GLAD
made4
17.7 years ago
Aedin Culhane
▴ 510
0
votes
5
replies
1.4k
views
installation of made4 package
made4
made4
updated 17.6 years ago by
Seth Falcon
★ 7.4k • written 17.6 years ago by
Weiwei Shi
★ 1.2k
0
votes
2
replies
1.4k
views
Problems with Affy names / BGA
Classification
affy
made4
Classification
affy
made4
updated 17.5 years ago by
Aedin Culhane
▴ 510 • written 17.5 years ago by
Heike Pospisil
▴ 310
0
votes
2
replies
1.4k
views
problems with affy function indexProbes on Mac
affy
made4
affy
made4
updated 17.4 years ago by
Martin Morgan
25k • written 17.5 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
818
views
Bug fix to made4
made4
made4
16.9 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
862
views
made4, memory issues
Network
Clustering
Cancer
Yeast
made4
Network
Clustering
Cancer
Yeast
made4
16.5 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
829
views
Any way to ouput the reordered gene list from heatmap.2()?
Cancer
made4
ASSIGN
Cancer
made4
ASSIGN
14.3 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
860
views
re-ordered gene list in heatplot of made4
made4
made4
14.2 years ago
xiangxue Guo
▴ 70
0
votes
0
replies
885
views
re-ordered gene list and column names on heatplot map
made4
made4
14.2 years ago
xiangxue Guo
▴ 70
0
votes
2
replies
1.2k
views
Reg: plotting 3d image of pca analysis
made4
made4
updated 13.9 years ago by
Steve Shen
▴ 330 • written 13.9 years ago by
Rohit Farmer
▴ 170
0
votes
0
replies
1.8k
views
Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer
graph
made4
Cancer
graph
made4
13.6 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
879
views
Question regarding COA plot generated by made4 package
made4
made4
12.0 years ago
Barbara Bo-Ju Shih
▴ 40
0
votes
1
reply
1.1k
views
Question regarding COA plot generated by made4 package
made4
made4
updated 12.0 years ago by
Aedin Culhane
▴ 510 • written 12.0 years ago by
Valerie Obenchain
★ 6.8k
0
votes
0
replies
979
views
Question regarding MADE4 graphs
Cancer
made4
Cancer
made4
12.0 years ago
Aedin Culhane
▴ 510
0
votes
3
replies
2.1k
views
What do ellipses in 'plotarrays' function represent (from made4)
made4
plotarrays
correspondence analysis
ellipse
updated 8.5 years ago by
Aedin Culhane
▴ 510 • written 8.9 years ago by
maartenvandijk
• 0
18 results • Page
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Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and gives inflated significance, as we showed in our 2012 pap…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark?
by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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