Bioconductor Made4

Showing : made4 • reset

votes

replies

2.0k

views

made4 plotarrays correspondence analysis ellipse

updated 8.5 years ago by Aedin Culhane ▴ 510 • written 8.8 years ago by maartenvandijk • 0

votes

replies

969

views

Cancer made4 Cancer made4

12.0 years ago Aedin Culhane ▴ 510

votes

1.1k

views

made4 made4

updated 12.0 years ago by Aedin Culhane ▴ 510 • written 12.0 years ago by Valerie Obenchain ★ 6.8k

votes

replies

867

views

made4 made4

12.0 years ago Barbara Bo-Ju Shih ▴ 40

votes

replies

1.8k

views

Cancer graph made4 Cancer graph made4

13.5 years ago Aedin Culhane ▴ 510

votes

replies

1.2k

views

made4 made4

updated 13.9 years ago by Steve Shen ▴ 330 • written 13.9 years ago by Rohit Farmer ▴ 170

votes

replies

848

views

made4 made4

14.2 years ago xiangxue Guo ▴ 70

votes

replies

877

views

made4 made4

14.2 years ago xiangxue Guo ▴ 70

votes

replies

816

views

Cancer made4 ASSIGN Cancer made4 ASSIGN

14.2 years ago Steve Lianoglou ★ 13k

votes

replies

855

views

Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4

16.5 years ago Aedin Culhane ▴ 510

votes

replies

806

views

made4 made4

16.8 years ago Aedin Culhane ▴ 510

votes

replies

1.4k

views

affy made4 affy made4

updated 17.4 years ago by Martin Morgan 25k • written 17.4 years ago by Jenny Drnevich ★ 2.2k

votes

replies

1.4k

views

Classification affy made4 Classification affy made4

updated 17.4 years ago by Aedin Culhane ▴ 510 • written 17.4 years ago by Heike Pospisil ▴ 310

votes

replies

1.4k

views

made4 made4

updated 17.6 years ago by Seth Falcon ★ 7.4k • written 17.6 years ago by Weiwei Shi ★ 1.2k

votes

replies

1.0k

views

Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4

17.7 years ago Aedin Culhane ▴ 510

votes

replies

884

views

Clustering Cancer CGH made4 Clustering Cancer CGH made4

17.8 years ago Richard Birnie ▴ 10

votes

replies

1.4k

views

Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4

updated 18.0 years ago by Ken Simpson ▴ 70 • written 18.0 years ago by Jenny Drnevich ★ 2.2k

votes

replies

915

views

Biobase affy marray convert made4 Biobase affy marray convert made4

updated 18.4 years ago by Aedin Culhane ▴ 510 • written 18.4 years ago by Jenny Drnevich ★ 2.2k

18 results • Page 1 of 1

Recent ...

Replies

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Awards • All

Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k