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mait
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758
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MAIT metabolomics analysis error
mait
5.7 years ago
YL
• 0
0
votes
1
reply
1.5k
views
MAIT or Specmine
metabolomics
mait
specmine
mass spectrometry
8.1 years ago
bhgyu
▴ 30
0
votes
1
reply
1.7k
views
Error package or namespace load failed for MAIT
MAIT
agricolae
updated 8.2 years ago by
shepherl
4.2k • written 8.2 years ago by
thomas
• 0
0
votes
0
replies
1.2k
views
PLS Plot and Model creation Bug
MAIT
PLS
PLSDA
PlotPLS
PLSModel
8.2 years ago
thomas
• 0
0
votes
0
replies
1.7k
views
News:
Initial List of Deprecated Packages for Bioc3.6
deprecate
EWCE
MAIT
stepwiseCM
onechannelgui
News
8.3 years ago
shepherl
4.2k
0
votes
1
reply
1.5k
views
Error in MAIT
MAIT
updated 9.8 years ago by
b.nota
▴ 370 • written 9.8 years ago by
uhaifabioinfo
• 0
0
votes
1
reply
1.5k
views
MAIT - suppress interactive mode
mait
metabolomics
updated 10.7 years ago by
Dan Tenenbaum
★ 8.2k • written 10.7 years ago by
dilara.ally
• 0
7 results • Page
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Comment: Getting a large intercept with DESeq2
by
Michael Love
43k
Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…
Comment: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…
Answer: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
The default parameterization in R is a treatment-contrasts parameterization that sets one of your groups as the baseline. So the intercept …
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
by
ATpoint
★ 5.0k
There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…
Answer: Post translational modifications and phosphoproteomics in limpa?
by
Gordon Smyth
53k
Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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