Showing : makeOrgPackageFromNCBI • reset
1
vote
3
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388
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makeOrgPackageFromNCBI generates an empty database?
OrganismDbi makeOrgPackageFromNCBI
updated 5 months ago by 66k • written 5 months ago by • 0
2
votes
5
replies
896
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI
updated 8 months ago by 66k • written 8 months ago by ▴ 80
0
votes
3
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675
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Error with makeOrgPackageFromNCBI - no information found for species with tax id
makeOrgPackageFromNCBI
updated 15 months ago by 66k • written 15 months ago by • 0
2
votes
4
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1.0k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 4.1 years ago by 66k • written 4.1 years ago by • 0
5
votes
7
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1.9k
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis
updated 14 months ago by ▴ 50 • written 4.3 years ago by ▴ 20
0
votes
2
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1.2k
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 4.3 years ago by 66k • written 4.3 years ago by • 0
0
votes
10
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1.5k
views
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi
6.9 years ago gabciamm • 0
2
votes
5
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1.7k
views
makeOrgPackageFromNCBI for non model species -> eror in file
makeorgpackagefromncbi
updated 3.0 years ago by 6.7k • written 8.0 years ago by ▴ 20
0
votes
5
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2.1k
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Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
9.4 years ago oliver.tills • 0
0
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0
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1.2k
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Error in makeOrgPackageFromNCBI for S. pombe!
makeorgpackagefromNCBI s.pombe sqliteExecStatement
9.7 years ago Parham • 0
10 results • Page 1 of 1
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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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