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metaMSdata

updated 3 months ago by shepherl 4.1k • written 3 months ago by Sadman • 0

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4 months ago Steven 0

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metaMSdata Bioconductor

4 months ago Abiologist • 0

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updated 5 months ago by shepherl 4.1k • written 5 months ago by khonda • 0

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6 months ago Daniel • 0

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6 months ago shuwangxinze1996 • 0

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metaMSdata edgeR

updated 7 months ago by Gordon Smyth 51k • written 7 months ago by Faisal • 0

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metaMSdata

updated 9 months ago by James W. MacDonald 67k • written 9 months ago by jianyang.liu • 0

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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Votes

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

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