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Retrieving Package Metadata from Bioconductor API: Versions and Dependencies
metaMSdata
updated 16 months ago by 4.2k • written 16 months ago by • 0
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Spam: How do professional SEO services enhance user experience on my website?
metaMSdata
17 months ago Steven 0
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
17 months ago Abiologist • 0
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News: Stop mirror service
metaMSdata
updated 18 months ago by 4.2k • written 18 months ago by • 0
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Can log2cpm be used for proteomics data normalization?
metaMSdata
19 months ago Daniel • 0
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
20 months ago • updated 19 months ago shuwangxinze1996 • 0
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Doing comparison of RNA-seq data using EdgeR
metaMSdata edgeR
updated 20 months ago by 53k • written 20 months ago by • 0
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Visium RNA
metaMSdata
written 21 months ago by • 0
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How to control RAN-seq samples from different libraries
metaMSdata
updated 22 months ago by 68k • written 22 months ago by • 0
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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