Bioconductor Metaarray

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1.5k

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metaArray metaArray

updated 13.0 years ago by Rob Scharpf ▴ 250 • written 13.0 years ago by Adrian Johnson ▴ 330

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MergeMaid metaArray MergeMaid metaArray

13.0 years ago Adrian Johnson ▴ 330

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metaArray metaArray

updated 14.1 years ago by DEBASHIS GHOSH ▴ 40 • written 14.1 years ago by boczniak767 ▴ 740

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convert metaArray convert metaArray

14.1 years ago boczniak767 ▴ 740

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4.3k

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metaArray metaArray

updated 14.1 years ago by DEBASHIS GHOSH ▴ 40 • written 14.1 years ago by boczniak767 ▴ 740

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RankProd GeneMeta metaArray RankProd GeneMeta metaArray

14.2 years ago boczniak767 ▴ 740

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metaArray metaArray

14.9 years ago Sheena Scroggins ▴ 30

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metaArray metaArray

14.9 years ago Reema Singh ▴ 570

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1.3k

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GO hgu133a MergeMaid metaArray GO hgu133a MergeMaid metaArray

updated 16.3 years ago by Martin Morgan 25k • written 16.3 years ago by rcaloger ▴ 500

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Cancer affy metaArray Cancer affy metaArray

17.4 years ago Max Kauer ▴ 140

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1.1k

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metaArray metaArray

updated 18.5 years ago by Rob Scharpf ▴ 250 • written 18.5 years ago by Ольга Камнева ▴ 90

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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