Bioconductor Metaarray

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metaArray metaArray

updated 12.6 years ago by DEBASHIS GHOSH ▴ 40 • written 12.6 years ago by boczniak767 ▴ 720

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convert metaArray convert metaArray

12.6 years ago boczniak767 ▴ 720

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RankProd GeneMeta metaArray RankProd GeneMeta metaArray

12.7 years ago boczniak767 ▴ 720

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metaArray metaArray

updated 12.6 years ago by DEBASHIS GHOSH ▴ 40 • written 12.6 years ago by boczniak767 ▴ 720

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metaArray metaArray

updated 11.5 years ago by Rob Scharpf ▴ 250 • written 11.5 years ago by Adrian Johnson ▴ 330

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GO hgu133a MergeMaid metaArray GO hgu133a MergeMaid metaArray

updated 14.8 years ago by Martin Morgan 25k • written 14.8 years ago by rcaloger ▴ 500

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MergeMaid metaArray MergeMaid metaArray

11.5 years ago Adrian Johnson ▴ 330

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metaArray metaArray

updated 17.0 years ago by Rob Scharpf ▴ 250 • written 17.0 years ago by Ольга Камнева ▴ 90

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Cancer affy metaArray Cancer affy metaArray

15.9 years ago Max Kauer ▴ 140

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metaArray metaArray

13.4 years ago Sheena Scroggins ▴ 30

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metaArray metaArray

13.4 years ago Reema Singh ▴ 570

11 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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