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minet
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parameters in build.mim in minet package
minet
build.mim
7.3 years ago
Pengcheng Yang
▴ 60
0
votes
0
replies
1.1k
views
changing the plot type in minet package
minet
plot
8.0 years ago
Angel
▴ 40
2
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6
replies
1.4k
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error in minet package
minet
software error
8.3 years ago
Angel
▴ 40
1
vote
1
reply
1.8k
views
Error function discretize
minet
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
sleidymagaly
• 0
0
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1
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908
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reverse engineering package
minet
qpgraph
minet
qpgraph
updated 14.1 years ago by
Robert Castelo
★ 3.2k • written 14.1 years ago by
Weiwei Shi
★ 1.2k
5 results • Page
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Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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Robert Castelo
★ 3.2k
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James W. MacDonald
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shepherl
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BioinfGuru
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Gordon Smyth
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