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mnn
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Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
heir_of_isildur88
• 0
2
votes
2
replies
2.1k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 2.5 years ago by
Guandong Shang
▴ 40 • written 5.1 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.2k
views
Help with the output from mnnCorrect
mnnCorect
MNN
5.4 years ago
sharvari gujja
▴ 40
2
votes
1
reply
2.5k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
hamza_karakurt
▴ 60
4 results • Page
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Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Votes
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
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