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MNN
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3
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6
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4.6k
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Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
heir_of_isildur88
• 0
2
votes
2
replies
2.9k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 3.5 years ago by
Guandong Shang
▴ 40 • written 6.1 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.4k
views
Help with the output from mnnCorrect
mnnCorect
MNN
6.3 years ago
sharvari gujja
▴ 40
2
votes
1
reply
3.0k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 6.3 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
hamza_karakurt
▴ 60
4 results • Page
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Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course
by
a2a2haa
• 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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