Bioconductor Molecular biology

Showing : molecular biology • reset

0

votes

6

replies

989

views

bioconductor molecular biology snps

updated 4.8 years ago by James W. MacDonald 63k • written 4.8 years ago by jebreen20 • 0

1

vote

0

replies

756

views

computational biology molecular biology RNA r-loop ncRNA Job

4.9 years ago l.brown ▴ 10

0

votes

0

replies

1.5k

views

genetics obesity molecular biology biomedical science Job

6.2 years ago njc65 • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k

Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…

Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k

Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …

Comment: DeSeq2 design fails (full model matrix is less than full rank) by Basti ▴ 720

As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…

Votes

A: collapseReplicates in DESeq2

Awards • All