Bioconductor Motiv

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1.0k

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motiv

updated 9.1 years ago by Charles Joly Beauparlant ▴ 170 • written 9.1 years ago by vedran.franke • 0

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1.9k

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rgadem motiv chipseq jaspar

updated 9.6 years ago by emercier • 0 • written 9.6 years ago by w.jarassier • 0

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1.6k

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rGADEM MotIV MotifDb rGADEM MotIV MotifDb

10.8 years ago Bahar ▴ 10

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1.2k

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MotIV MotIV

10.9 years ago Ou, Jianhong ★ 1.3k

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Transcription MotIV MotifDb Transcription MotIV MotifDb

updated 12.1 years ago by Jing Huang ▴ 380 • written 12.1 years ago by Paul Shannon ▴ 750

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2.6k

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Annotation GO MotIV Annotation GO MotIV

updated 12.7 years ago by Arno BioC ▴ 10 • written 12.7 years ago by Vince Schulz ▴ 160

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4.2k

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Arabidopsis thaliana MotIV Arabidopsis thaliana MotIV

updated 12.7 years ago by nooshin ▴ 300 • written 12.7 years ago by Paul Shannon ▴ 750

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1.3k

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MotIV MotIV

updated 12.7 years ago by Dan Tenenbaum ★ 8.2k • written 12.7 years ago by Swaroopa Muppiri ▴ 20

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Alignment rGADEM MotIV Alignment rGADEM MotIV

13.4 years ago Mercier Eloi ▴ 60

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1.1k

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Alignment rGADEM MotIV Alignment rGADEM MotIV

13.4 years ago Chris Whelan ▴ 60

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1.8k

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rGADEM MotIV rGADEM MotIV

updated 13.4 years ago by Charles Joly Beauparlant ▴ 170 • written 13.4 years ago by mattia pelizzola ▴ 200

11 results • Page 1 of 1

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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