Bioconductor Motiv

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Arabidopsis thaliana MotIV Arabidopsis thaliana MotIV

updated 12.0 years ago by nooshin ▴ 300 • written 12.0 years ago by Paul Shannon ▴ 750

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Annotation GO MotIV Annotation GO MotIV

updated 12.0 years ago by Arno BioC ▴ 10 • written 12.0 years ago by Vince Schulz ▴ 150

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Transcription MotIV MotifDb Transcription MotIV MotifDb

updated 11.5 years ago by Jing Huang ▴ 380 • written 11.5 years ago by Paul Shannon ▴ 750

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rgadem motiv chipseq jaspar

updated 8.9 years ago by emercier • 0 • written 9.0 years ago by w.jarassier • 0

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rGADEM MotIV rGADEM MotIV

updated 12.8 years ago by Charles Joly Beauparlant ▴ 170 • written 12.8 years ago by mattia pelizzola ▴ 200

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rGADEM MotIV MotifDb rGADEM MotIV MotifDb

10.2 years ago Bahar ▴ 10

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Alignment rGADEM MotIV Alignment rGADEM MotIV

12.8 years ago Mercier Eloi ▴ 60

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MotIV MotIV

updated 12.0 years ago by Dan Tenenbaum ★ 8.2k • written 12.0 years ago by Swaroopa Muppiri ▴ 20

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MotIV MotIV

10.3 years ago Ou, Jianhong ★ 1.3k

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Alignment rGADEM MotIV Alignment rGADEM MotIV

12.8 years ago Chris Whelan ▴ 60

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motiv

updated 8.4 years ago by Charles Joly Beauparlant ▴ 170 • written 8.4 years ago by vedran.franke • 0

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Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

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Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

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