Showing : multtest • reset
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questions on results from mt.maxT (multtest)
multtest affy multtest affy
updated 19.2 years ago by ▴ 120 • written 19.2 years ago by ▴ 300
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4
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1.0k
views
problems with multtest
Annotation multtest Annotation multtest
updated 20.2 years ago by 65k • written 20.2 years ago by ★ 3.4k
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6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
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5
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1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
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3
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1.3k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 17.2 years ago by ▴ 870 • written 17.2 years ago by ▴ 20
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9
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2.0k
views
multtest problem...
multtest multtest
updated 19.0 years ago by ▴ 110 • written 19.0 years ago by ▴ 430
0
votes
3
replies
970
views
passing my data to siggenes package
multtest siggenes multtest siggenes
updated 18.5 years ago by ▴ 900 • written 18.5 years ago by ▴ 140
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votes
3
replies
908
views
defect in multtest.pdf
multtest multtest
updated 21.8 years ago by ★ 3.9k • written 21.8 years ago by ★ 1.4k
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3
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3.3k
views
Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 19.2 years ago by ▴ 300 • written 19.2 years ago by ▴ 20
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5
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1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
0
votes
4
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1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
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3
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937
views
Limma then Annaffy?
multtest limma multtest limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 140
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2
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832
views
subset eset by row broken
Survival rgu34a multtest affy Survival rgu34a multtest affy
18.0 years ago Kimpel, Mark W ▴ 890
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3
replies
1.2k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 80
0
votes
2
replies
1.2k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
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2
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3.5k
views
multtest and Cox regression
Regression multtest Regression multtest
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ▴ 140
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3
replies
1.3k
views
Questions about multtest
multtest multtest
updated 20.2 years ago by ▴ 550 • written 20.2 years ago by ★ 3.4k
0
votes
2
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972
views
Multtest data problem....
multtest multtest
updated 21.9 years ago by ▴ 170 • written 21.9 years ago by ▴ 90
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2
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1.3k
views
limma/multtest comparison question
multtest limma multtest limma
19.9 years ago Sean Davis 21k
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3
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837
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago Francois Pepin ★ 1.3k
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2
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1.5k
views
multtest different seed
multtest multtest
15.6 years ago Stefano Moretti ▴ 20
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2
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962
views
Multtest Question!
multtest multtest
21.2 years ago Puhong Gao ▴ 20
0
votes
3
replies
3.3k
views
problem updating packages importing the package "MASS"
multtest multtest
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 830
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2
replies
1.3k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
17.9 years ago Kimpel, Mark W ▴ 890
0
votes
6
replies
3.3k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
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votes
3
replies
2.7k
views
mt.teststat
multtest DECIPHER multtest DECIPHER
updated 8.3 years ago by ▴ 20 • written 21.1 years ago by ▴ 220
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3
replies
2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 80
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votes
3
replies
1.2k
views
Webbioc error exprSet vs expressionSet
Preprocessing multtest webbioc Preprocessing multtest webbioc
16.1 years ago Balasubramanian Ganesan ▴ 70
0
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2
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1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
0
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2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
2
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1.4k
views
'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
15.9 years ago Glazko, Galina ▴ 350
0
votes
1
reply
620
views
se.exprs/signficance analysis
multtest multtest
updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 340
0
votes
1
reply
739
views
Filtering and Multiple Testing
multtest multtest
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 70
0
votes
1
reply
910
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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1
reply
1.3k
views
[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 17.4 years ago by ▴ 900 • written 17.4 years ago by 25k
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votes
1
reply
770
views
affy troubles
probe multtest affy probe multtest affy
20.5 years ago peter robinson ▴ 300
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 100
0
votes
1
reply
1.5k
views
Bioconductor Digest, Vol 31, Issue 7
Microarray Annotation Cancer probe multtest affy limma marray Microarray Annotation affy
18.6 years ago Shruti Subramaniam ▴ 30
0
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1
reply
981
views
Re: Bioconductor digest, Vol 1 #134 - 5 msgs
cdf multtest affy GLAD cdf multtest affy GLAD
updated 21.5 years ago by ★ 2.3k • written 21.5 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Help with raw p-value
multtest multtest
updated 21.5 years ago by ▴ 170 • written 21.5 years ago by ▴ 70
0
votes
1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 20
0
votes
1
reply
1.8k
views
How do I get p-values from multtest?
multtest convert multtest convert
updated 19.5 years ago by ▴ 10 • written 19.5 years ago by ★ 3.4k
0
votes
1
reply
622
views
Subsetting in R
multtest multtest
updated 20.6 years ago by ★ 1.1k • written 20.6 years ago by ★ 3.4k
0
votes
4
replies
1.9k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 30
0
votes
2
replies
1.4k
views
[altirriba@hotmail.com: Design in factDesign] (fwd)
multtest limma factDesign multtest limma factDesign
updated 20.1 years ago by ▴ 630 • written 20.1 years ago by ▴ 350
0
votes
1
reply
1.2k
views
How to filter up- and down-regulated genes?
multtest multtest
updated 20.0 years ago by 21k • written 20.0 years ago by ▴ 60
0
votes
2
replies
1.4k
views
Minimum expression threshold?
multtest affy multtest affy
updated 8 months ago by • 0 • written 20.7 years ago by ▴ 20
0
votes
1
reply
848
views
Minimum expression threshold?
multtest multtest
updated 20.7 years ago by ★ 2.3k • written 20.7 years ago by ▴ 20
0
votes
1
reply
566
views
where to find the document of 'multtest.intro"
multtest multtest
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 30
0
votes
1
reply
661
views
analysis post gcrma (factdesign? multtest? siggenes?)
multtest multtest
updated 19.5 years ago by 65k • written 19.5 years ago by ▴ 100
50 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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