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nanoporernaseq
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2.0k
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How to normalize long-read RNA-seq data for comparison with short-reads
NanoporeRNASeq
LongRead
Normalization
ShortRead
IlluminaRNASeq
15 months ago
Bernardo
▴ 10
1
vote
1
reply
1.5k
views
read nanopore Fastq file
NanoporeRNASeq
RNASeq
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
sinanoori88
• 0
1
vote
2
replies
1.2k
views
running DESeq2 from nanopore wf-alignment workflow
DESeq2
NanoporeRNASeq
updated 16 months ago by
Michael Love
42k • written 16 months ago by
shahla.kangachar
• 0
0
votes
0
replies
745
views
Job:
Postdoctoral position in Computational Biology - RNA dynamics through Nanopore - Milan (Italy)
NanoporeRNASeq
RNAdynamics
RNAmodifications
3.0 years ago
mattia pelizzola
▴ 200
0
votes
1
reply
637
views
Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression
NanoporeRNASeq
DESeq2
GeneExpression
DEVis
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
Ana
• 0
5 results • Page
1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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