Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ncbi geo
•
reset
5
votes
4
replies
3.8k
views
GEOquery Fails to Download Series Matrix File
geoquery
ncbi geo
geo data
7.5 years ago
fongchunchan
▴ 30
2
votes
3
replies
2.7k
views
NCBI FTP server IP address
NCBI GEO
updated 3.5 years ago by
SAn
• 0 • written 8.2 years ago by
maedakus
▴ 10
3
votes
1
reply
1.7k
views
Processing several GSM from GEO database using Barcode and fRMA
frma
barcode
geneexpression
gsm
ncbi geo
updated 6.5 years ago by
Matthew McCall
▴ 830 • written 6.5 years ago by
diana.elassal
• 0
2
votes
3
replies
1.5k
views
Using LIMMA for differential gene analysis of microarray data
limma
differential gene expression
ncbi geo
affymetrix microarrays
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
Francesca McGrath
• 0
0
votes
2
replies
1.2k
views
GEOQuery bug, NCBI or package?
geoquery
ncbi geo
biobase
5.4 years ago
cschot3
• 0
3
votes
2
replies
1.2k
views
Difficulty for analysis of GSE7864
limma
microarray
bioconductor
ncbi geo
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
kevin.m.hao
▴ 10
6 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Awards
• All
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Popular Question
to
Ian D.
▴ 70
Popular Question
to
junhui.li11
• 0
Locations
• All
Germany,
1 minute ago
Singapore,
5 minutes ago
Belgium,
9 minutes ago
India,
27 minutes ago
WEHI, Melbourne, Australia,
49 minutes ago
Traffic: 621 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6