Showing : ncounter • reset
2
votes
4
replies
582
views
Why NanoStringDiff package so slow?
NanoStringDiff NanoString nCounter DE analysis
updated 9 weeks ago by ▴ 20 • written 24 months ago by ▴ 30
0
votes
0
replies
662
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter
4.0 years ago c.kohler • 0
2 results • Page 1 of 1
Recent ...
Replies
Answer: tximeta countsFromAbundance for downstream analysis by Michael Love 33k
The counts will not be closely correlated to the TPM across genes, because the gene length is included in the gene count but not in the TPM…
Answer: DESeq2 - understanding intercept and contrasts by Michael Love 33k
For questions on setting up the statistical design and contrasts, I recommend to consult with a local statistician or someone familiar with…
Answer: Interaction terms and selection of coef in normal and shrunk results by Michael Love 33k
Please see the diagram in the vignette on interactions, but for further questions on setting up the design, I recommend to consult with a l…
Answer: about baseMean in DEseq2 by Michael Love 33k
More information about the columns is here: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#access-…
Answer: DESeq2, what to do when controls are 7 times more abundant than treatments by Michael Love 33k
I generally recommend your option 2 here: filtering out genes unless they are minimally expressed in the lowly sequenced condition. This is…
Votes
Answer: Can't produce a generegiontrack from my txdb anymore
Answer: how to get genomic coordinates from an MIndex object
Answer: How to sort out error in gdcCEAnalysis function of GDCRNATools R package?
what the first row without a gene name?
Comment: Error when loading DEP in RStudio
Awards • All
Scholar to Michael Lawrence 11k
Popular Question to hwu12 ▴ 10
Teacher to Laurent Gatto 1.5k
Popular Question to svlachavas ▴ 780
Popular Question to Hina Bandukwala • 0
Locations • All
WEHI, Melbourne, Australia, 10 minutes ago
The city by the bay, 22 minutes ago
United States, 26 minutes ago
United States, 57 minutes ago
United States, 1 hour ago
Traffic: 318 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6