Biostar Ncounter

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NanoStringDiff NanoString nCounter DE analysis

updated 14 months ago by anastazie.d ▴ 20 • written 3.0 years ago by lim6432 ▴ 50

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

5.1 years ago c.kohler • 0

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Comment: conditional command within GRanges by Basti ▴ 390

I can't reproduce your issue because you did not provided an example of your dataset (example with `dput(head(data1))`, but in the first ca…

Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120

That sounds like you have the wrong version of the annotation compared to which version you used for the quantification?

Comment: Error in Create switchAnalyzeRlist by bpshtiwan ▴ 10

Great... now it is same. but still I have problem with four possibilities during using IsoformSwitchAnalyzeR. Knidly, any idea where is the…

Comment: Retrieve gene summary start/end in biomart query by rbenel ▴ 20

Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…

Comment: MMDiff2 memory issues by e.iich • 0

running against a similar issue. Have you found any solutions?

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Answer: mapToAlignments_issue

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