Bioconductor Neqc

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neqc illumina geo limma

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by akridgerunner ▴ 30

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limma arrayweights logfoldchange neqc normalization

updated 8.5 years ago by svlachavas ▴ 830 • written 8.5 years ago by merella.stefania • 0

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neqc limma microarray illumina

updated 8.7 years ago by Gordon Smyth 51k • written 8.7 years ago by alexvpickering ▴ 110

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limma neqc

updated 8.9 years ago by Gordon Smyth 51k • written 13.7 years ago by Arnar Flatberg ▴ 70

4 results • Page 1 of 1

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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k

For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

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