Bioconductor Neqc

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neqc illumina geo limma

updated 9.4 years ago by Gordon Smyth 53k • written 9.4 years ago by akridgerunner ▴ 30

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limma arrayweights logfoldchange neqc normalization

updated 9.4 years ago by svlachavas ▴ 840 • written 9.4 years ago by merella.stefania • 0

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neqc limma microarray illumina

updated 9.7 years ago by Gordon Smyth 53k • written 9.7 years ago by alexvpickering ▴ 110

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limma neqc

updated 9.8 years ago by Gordon Smyth 53k • written 14.7 years ago by Arnar Flatberg ▴ 70

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Comment: Save the Date for EuroBioC2026 in Turku! by jamesbennettki • 0

That sounds amazing I have always wanted to visit Finland and meet others in the Bioconductor community Events like EuroBioC2026 inspire me…

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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