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Installation problem of rtracklayer on Bioconductor version 3.19
newpackage
rtracklayer
updated 10 weeks ago by
shepherl
3.8k • written 10 weeks ago by
Lucille
• 0
3
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4
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Problem loading R packages on MacBook Pro
newpackage
ChAMP
updated 19 months ago by
Yi Ping
• 0 • written 2.5 years ago by
Brendon
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0
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0
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796
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News:
New Package Submission Deadline for Bioc Release 3.14
newpackage
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2.6 years ago
shepherl
3.8k
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News:
Bioconductor 3.13 New Package Submission Deadline
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newpackage
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3.1 years ago • updated 3.0 years ago
shepherl
3.8k
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when does the DOI become active?
CONSTANd
newpackage
updated 2.9 years ago by
guido.barzaghi
• 0 • written 3.1 years ago by
joris.vanhoutven
▴ 10
2
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2
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951
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How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
Krutik Patel
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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