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Statistical test
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
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updated 13 months ago by 4.1k • written 13 months ago by • 0
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error running exp2grn
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
16 months ago Kilian • 0
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave hgu133a2.db
updated 16 months ago by ★ 4.6k • written 16 months ago by • 0
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Spam: 7z password remover tool
mgu74bv2cdf NewWave hgu133a2.db
19 months ago roma 0
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Spam: ost to pst migration software
mgu74bv2cdf NewWave hgu133a2.db
19 months ago roma 0
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Extracting DEG from topTags
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updated 19 months ago by 52k • written 19 months ago by • 0
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How to use txtimport and do differential expression
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updated 20 months ago by 67k • written 20 months ago by • 0
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Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
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Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
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