Bioconductor Nondetects

Showing : nondetects • reset

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500

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nondetects qPCR qPCRData

3.0 years ago jhackett ▴ 30

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1.8k

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nondetects software error

updated 6.2 years ago by corocla • 0 • written 6.3 years ago by Ryan C. Thompson ★ 7.9k

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596

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bug nondetects HTqPCR

updated 6 months ago by Nat.Nataren • 0 • written 7 months ago by Ed Siefker ▴ 230

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251

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qPCR nondetects

5 months ago Ed Siefker ▴ 230

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852

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nondetects qpcrImpute

updated 4.9 years ago by Matthew McCall ▴ 830 • written 5.2 years ago by D.J.Coulson2 • 0

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2.1k

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qPCRset object nondetects r package txt

updated 6 months ago by Nat.Nataren • 0 • written 6.3 years ago by s.m.may • 0

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1.3k

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nondetects R PCR

updated 6.7 years ago by Matthew McCall ▴ 830 • written 6.7 years ago by garciaii_antuerpia • 0

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Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

Answer: fgsea significant result by ATpoint ★ 4.1k

Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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