Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
normalisation
•
reset
2
votes
2
replies
435
views
Double normalising when using sva and deseq2
DESeq2
Normalisation
Bulkrnaseq
Svaseq
5 months ago
BioinfGuru
▴ 70
1
vote
2
replies
654
views
Different regions for normalisation
DESeq2
median-of-ratios
normalisation
18 months ago
msrch
• 0
3
votes
2
replies
1.2k
views
Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expected: Problem?
normalisation
DESEQ2
updated 3.2 years ago by
swbarnes2
★ 1.4k • written 3.2 years ago by
xavier
• 0
0
votes
3
replies
3.8k
views
Normalisation - Deseq2 vs StingTie-Ballgown
deseq2
StringTie
RNA-seq
normalisation
updated 4.9 years ago by
Michael Love
42k • written 4.9 years ago by
JindrichK
• 0
0
votes
7
replies
1.4k
views
DESEQ2 for circRNA normalisation
DESEQ2
circRNA
normalisation
updated 4.9 years ago by
Michael Love
42k • written 4.9 years ago by
zoe.ward
• 0
5 results • Page
1 of 1
Recent ...
Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
• 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
• 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
Awards
• All
Teacher
to
Gordon Smyth
51k
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
shepherl
4.1k
Supporter
to
Paul Harrison
▴ 100
Popular Question
to
Mikhail Dozmorov
▴ 30
Locations
• All
France,
4 minutes ago
United States,
5 minutes ago
Austria,
10 minutes ago
UPF, Barcelona, Spain,
49 minutes ago
Switzerland/Lausanne/EPFL,
1 hour ago
Traffic: 693 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6