Bioconductor CircRNA

Showing : circRNA • reset

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714

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circRNA circRNAprofiler

3.9 years ago Bogdan ▴ 670

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1.0k

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circRNA RNA-seq circRNAprofiler

4.6 years ago Terra • 0

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1.7k

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DESEQ2 circRNA normalisation

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by zoe.ward • 0

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1.2k

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deseq2 circRNA rna-editing

updated 5.5 years ago by Michael Love 43k • written 5.6 years ago by maxhenryhills • 0

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1.4k

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deseq2 circrna rsubread

updated 6.9 years ago by Wei Shi ★ 3.6k • written 6.9 years ago by csijst • 0

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2.1k

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deseq2 circrna ciri ciri2

7.0 years ago sbcn ▴ 80

6 results • Page 1 of 1

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Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…

Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a

Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Votes

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Awards • All

Scholar to James W. MacDonald 68k