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Showing :
circRNA
•
reset
0
votes
0
replies
204
views
visualization of circRNA
circRNA
circRNAprofiler
13 months ago
Bogdan
▴ 640
0
votes
0
replies
352
views
circRNAprofiler - miRNA binding sites
circRNA
RNA-seq
circRNAprofiler
22 months ago
Terra
• 0
0
votes
7
replies
470
views
DESEQ2 for circRNA normalisation
DESEQ2
circRNA
normalisation
updated 2.7 years ago by
Michael Love
37k • written 2.7 years ago by
zoe.ward
• 0
1
vote
1
reply
469
views
DESeq2 Analysis of RNA-Edited Reads and Circular RNA
deseq2
circRNA
rna-editing
updated 2.8 years ago by
Michael Love
37k • written 2.8 years ago by
maxhenryhills
• 0
0
votes
4
replies
652
views
Is circular RNA read out as linear fragments during Rsubread-DESeq2
deseq2
circrna
rsubread
updated 4.2 years ago by
Wei Shi
★ 3.5k • written 4.2 years ago by
csijst
• 0
2
votes
5
replies
1.1k
views
DESeq2 on CIRI results ?
deseq2
circrna
ciri
ciri2
4.3 years ago
sbcn
▴ 80
6 results • Page
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Recent ...
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Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Comment: errors in annotation
by
James W. MacDonald
60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Votes
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
Comment: How to get gene length for RPKM directly from DGEList object in latest edgeR?
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