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normalisation
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Double normalising when using sva and deseq2
DESeq2
Normalisation
Bulkrnaseq
Svaseq
11 months ago
BioinfGuru
▴ 70
1
vote
2
replies
763
views
Different regions for normalisation
DESeq2
median-of-ratios
normalisation
2.0 years ago
msrch
• 0
3
votes
2
replies
1.4k
views
Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expected: Problem?
normalisation
DESEQ2
updated 3.7 years ago by
swbarnes2
★ 1.4k • written 3.7 years ago by
xavier
• 0
0
votes
3
replies
4.0k
views
Normalisation - Deseq2 vs StingTie-Ballgown
deseq2
StringTie
RNA-seq
normalisation
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
JindrichK
• 0
0
votes
7
replies
1.7k
views
DESEQ2 for circRNA normalisation
DESEQ2
circRNA
normalisation
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
zoe.ward
• 0
5 results • Page
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Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
Sorry for the delay, here it is my code which displays the warning message: Normalization: countsdge <- DGEList(counts, timepoint, ge…
Answer: blockwiseModule crashes in the end and doesn't generate modules
by
phylliskeller162
• 0
Crave adrenaline, music, and pixel-perfect jumps? [Geometry Dash][1] delivers it all in one pulse-pounding ride! [1]: https://geomet…
Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm
by
Charles
• 0
I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
by
James W. MacDonald
68k
Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.
Comment: Heatmap of a transformed deseq object with pheatmap
by
James W. MacDonald
68k
The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…
Votes
A: conceptual question about FDR, FDR adjusted p-value and q-value
A: conceptual question about FDR, FDR adjusted p-value and q-value
conceptual question about FDR, FDR adjusted p-value and q-value
edgeR multiple contrasts Vs. One test
A: edgeR multiple contrasts Vs. One test
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