Bioconductor Normalisation

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DESeq2 median-of-ratios normalisation

7 months ago msrch • 0

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normalisation DESEQ2

updated 2.2 years ago by swbarnes2 ★ 1.3k • written 2.2 years ago by xavier • 0

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deseq2 StringTie RNA-seq normalisation

updated 4.0 years ago by Michael Love 41k • written 4.0 years ago by JindrichK • 0

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DESEQ2 circRNA normalisation

updated 4.0 years ago by Michael Love 41k • written 4.0 years ago by zoe.ward • 0

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k