Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
padj
•
reset
0
votes
5
replies
2.5k
views
NA in padj in the DEXSeq package
dexseq
padj
8.3 years ago
gil.hornung
• 0
6
votes
2
replies
4.8k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
jjinhyoungkim
▴ 20
1
vote
3
replies
4.2k
views
deseq: all padj values equal to 1
deseq
padj
updated 9.0 years ago by
Michael Love
41k • written 9.3 years ago by
ccheung
• 0
0
votes
1
reply
1.5k
views
Found consistent padj values for all the samples in DESeq2 R Package
deseq2
padj
Benjamini and hochberg consequences
affy
7.0 years ago
jignashapatel10
• 0
2
votes
5
replies
5.3k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
courtney.stairs
• 0
1
vote
5
replies
2.3k
views
Constant High Padj Values
deseq2
differential gene expression
multiple factor design
padj
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
le.alex.chang
• 0
0
votes
1
reply
618
views
How to set threshold of padj value in DeSeq2
DESeq2
padj
default
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Serena
• 0
0
votes
1
reply
1.4k
views
Change the FDR in DEXSeq
FDR
padj
updated 7.5 years ago by
Jakub
▴ 50 • written 7.5 years ago by
arom2
• 0
0
votes
1
reply
1.8k
views
Different padj value after multiple testing
deseq2
padj
multiple comparisons
differential gene expression
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
tarun2
• 0
9 results • Page
1 of 1
Recent ...
Replies
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards
• All
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.9k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Locations
• All
WEHI, Melbourne, Australia,
just now
France,
4 minutes ago
United States,
24 minutes ago
European Union,
1 hour ago
United States,
1 hour ago
Traffic: 574 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6