Biostar Paired-end reads

Showing : paired-end reads • reset

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673

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diffbind paired-end reads

updated 14 months ago by Rory Stark ★ 4.3k • written 5.0 years ago by rbronste ▴ 60

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738

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paired-end reads bam file

4.2 years ago ioannis.vardaxis ▴ 30

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581

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dnaseq rtracklayer paired-end reads

4.6 years ago zwfanwz678 • 0

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783

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summarizeoverlaps paired-end reads readGAlignmentPairs

4.8 years ago teresati ▴ 10

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544

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quasr quasr error paired-end reads rnaseq

5.0 years ago guillaume.dachy • 0

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577

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quasr paired-end reads rnaseq

5.1 years ago guillaume.dachy • 0

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611

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quasr rnaseq paired-end reads

5.1 years ago guillaume.dachy • 0

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1.0k

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rsamtools paired-end reads countbam

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by Dario Strbenac ★ 1.5k

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Comment: using the goana function from edgeR by David Rengel ▴ 70

Thanks a lot Gordon, I misunderstood the way the analysis are performed, I see now it works the way topGO does. It is nice to have annotat…

Comment: Where can I find EnsDb.Hsapiens.v105? by Johannes Rainer ★ 1.9k

What version of R and `AnnotationHub` are you using? Release 105 is definitely available for the current Bioconductor release (3.14) with R…

Answer: Where can I find EnsDb.Hsapiens.v105? by Hervé Pagès 15k

Note that, alternatively, you can make a TxDb object: ``` library(GenomicFeatures) txdb <- makeTxDbFromEnsembl("Homo sapiens", release=105…

Comment: Test if a gene is NOT differentially expressed in DESeq2? by Michael Love 35k

You would just use a combination of lessAbs and greaterAbs (default).

Comment: Test if a gene is NOT differentially expressed in DESeq2? by penny.lane • 0

OK, thanks both, that makes sense and I can see from the vignette now that I'd basically run some variant of this command to get those gene…

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C: Reading gff files in R

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