Biostar Paired-end reads

Showing : paired-end reads • reset

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789

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diffbind paired-end reads

updated 2.3 years ago by Rory Stark ★ 4.6k • written 6.0 years ago by rbronste ▴ 60

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1.0k

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paired-end reads bam file

5.2 years ago ioannis.vardaxis ▴ 30

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809

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dnaseq rtracklayer paired-end reads

5.6 years ago zwfanwz678 • 0

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917

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summarizeoverlaps paired-end reads readGAlignmentPairs

5.9 years ago teresati ▴ 10

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681

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quasr quasr error paired-end reads rnaseq

6.1 years ago guillaume.dachy • 0

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724

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quasr paired-end reads rnaseq

6.1 years ago guillaume.dachy • 0

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747

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quasr rnaseq paired-end reads

6.1 years ago guillaume.dachy • 0

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1.2k

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rsamtools paired-end reads countbam

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by Dario Strbenac ★ 1.5k

8 results • Page 1 of 1

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Comment: DESeq2 and heatmap for multiple comparisons by artem.vorobyev • 0

this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…

Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0

> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…

Comment: Why in Bioconductor community people rarely upvote questions? by Hervé Pagès 16k

BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …

Answer: DESeq2 and heatmap for multiple comparisons by swbarnes2 ★ 1.2k

If you want to know what genes are different between lesion and treated, compare them to each other.

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Comment: recount 3 protect read length metadata

Answer: Doubts about manipulation and annotation of microarray files deposited at GEO

C: Batch correction in DESeq2

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair

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