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paired-end reads
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0
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1.2k
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Merge two BAM files into one paired-end file
paired-end reads
bam file
5.8 years ago
ioannis.vardaxis
▴ 30
0
votes
1
reply
1.0k
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.2 years ago
zwfanwz678
• 0
1
vote
0
replies
1.0k
views
generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps
paired-end reads
readGAlignmentPairs
6.5 years ago
teresati
▴ 10
0
votes
2
replies
924
views
DiffBind PE data
diffbind
paired-end reads
updated 2.9 years ago by
Rory Stark
★ 5.0k • written 6.7 years ago by
rbronste
▴ 60
0
votes
0
replies
779
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
6.7 years ago
guillaume.dachy
• 0
0
votes
0
replies
903
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
6.7 years ago
guillaume.dachy
• 0
0
votes
0
replies
828
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
6.8 years ago
guillaume.dachy
• 0
1
vote
2
replies
1.3k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools
paired-end reads
countbam
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
Dario Strbenac
★ 1.5k
8 results • Page
1 of 1
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Replies
Comment: LIMMA dupcor() function time issue.
by
Gordon Smyth
48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb
by
robynne.braun
• 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Votes
Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
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