Bioconductor Paired-end reads

Showing : paired-end reads • reset

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1.2k

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paired-end reads bam file

5.8 years ago ioannis.vardaxis ▴ 30

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1.0k

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dnaseq rtracklayer paired-end reads

6.2 years ago zwfanwz678 • 0

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1.0k

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summarizeoverlaps paired-end reads readGAlignmentPairs

6.5 years ago teresati ▴ 10

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924

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diffbind paired-end reads

updated 2.9 years ago by Rory Stark ★ 5.0k • written 6.7 years ago by rbronste ▴ 60

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779

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quasr quasr error paired-end reads rnaseq

6.7 years ago guillaume.dachy • 0

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903

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quasr paired-end reads rnaseq

6.7 years ago guillaume.dachy • 0

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828

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quasr rnaseq paired-end reads

6.8 years ago guillaume.dachy • 0

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1.3k

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rsamtools paired-end reads countbam

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by Dario Strbenac ★ 1.5k

8 results • Page 1 of 1

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Comment: LIMMA dupcor() function time issue. by Gordon Smyth 48k

That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …

Comment: Specifying evidence channels in STRINGdb by robynne.braun • 0

Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…

Comment: Problems with FLOWAI by SHASHI • 0

please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA

Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Votes

Answer: Deseq2, enrichGO and ensembl ID

A: LIMMA dupcor() function time issue.

Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

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