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paired-end reads
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826
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Merge two BAM files into one paired-end file
paired-end reads
bam file
4.6 years ago
ioannis.vardaxis
▴ 30
0
votes
1
reply
639
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
5.0 years ago
zwfanwz678
• 0
1
vote
0
replies
828
views
generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps
paired-end reads
readGAlignmentPairs
5.2 years ago
teresati
▴ 10
0
votes
2
replies
704
views
DiffBind PE data
diffbind
paired-end reads
updated 20 months ago by
Rory Stark
★ 4.4k • written 5.4 years ago by
rbronste
▴ 60
0
votes
0
replies
582
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
5.5 years ago
guillaume.dachy
• 0
0
votes
0
replies
618
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
5.5 years ago
guillaume.dachy
• 0
0
votes
0
replies
650
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
5.5 years ago
guillaume.dachy
• 0
1
vote
2
replies
1.1k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools
paired-end reads
countbam
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
Dario Strbenac
★ 1.5k
8 results • Page
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Comment: why org.Hs.egGO2ALLEGS contain genes number difference from GO database?
by
pengmin.wang.1
• 0
yes, I also find genes in org.Bt.egGO2ALLEGS (bovine) are always less than online GO database in the same term. So do you know how to get t…
Comment: how to get gene list for given GO terms?
by
pengmin.wang.1
• 0
Hi, do you know how to get the gene list that have annotations from online GO database. For example, y <- as.list(org.Bt.egGO2ALLEGS), y co…
Comment: RSEM - tximport; where is effective_length information used? Implications for sc
by
Kelen
• 0
Thank you. Gene-level analysis. I don't yet have a specific downstream pipeline in mind - I am trying to understand what limitations I migh…
Comment: FeaturePlot in scater
by
Guandong Shang
▴ 20
Thanks, this is what I want!
Comment: Using Age or other numerical variable to model expression in deseq2
by
James W. MacDonald
60k
If you converted to a factor, the intercept is the reference level (you have to look at `levels(age)` to know what the reference is). If yo…
Votes
A: paired and unpaired test at the same time with voom limma
Comment: Duplicate correlation with limma in before-after exposure experiment
Answer: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
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