Bioconductor Paired-end reads

Showing : paired-end reads • reset

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summarizeoverlaps paired-end reads readGAlignmentPairs

8.0 years ago teresati ▴ 10

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1.8k

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rsamtools paired-end reads countbam

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by Dario Strbenac ★ 1.6k

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quasr paired-end reads rnaseq

8.2 years ago guillaume.dachy • 0

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1.1k

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quasr quasr error paired-end reads rnaseq

8.2 years ago guillaume.dachy • 0

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1.3k

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diffbind paired-end reads

updated 4.4 years ago by Rory Stark ★ 5.2k • written 8.2 years ago by rbronste ▴ 60

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1.4k

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dnaseq rtracklayer paired-end reads

7.7 years ago zwfanwz678 • 0

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1.8k

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paired-end reads bam file

7.3 years ago ioannis.vardaxis ▴ 30

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1.1k

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quasr rnaseq paired-end reads

8.3 years ago guillaume.dachy • 0

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Comment: ComBat with repeated measures by ATpoint ★ 4.8k

It looks to me that you do not need the batch information since subject is nested with batch so correcting for subject will do a paired ana…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by ATpoint ★ 4.8k

You realize this is a spam bot talking to you?

Comment: Merging EPICV1 and V2 betas by Garbayo • 0

[BitLife][1]: Life Simulator, usually referred to as BitLife, is a mobile life simulator game created by developer CandyWriter LLC on Septe…

Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …

Votes

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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