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paired-end reads
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1.1k
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generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps
paired-end reads
readGAlignmentPairs
6.7 years ago
teresati
▴ 10
1
vote
2
replies
1.4k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools
paired-end reads
countbam
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
953
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
6.9 years ago
guillaume.dachy
• 0
0
votes
0
replies
836
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
6.9 years ago
guillaume.dachy
• 0
0
votes
2
replies
975
views
DiffBind PE data
diffbind
paired-end reads
updated 3.1 years ago by
Rory Stark
★ 5.1k • written 6.9 years ago by
rbronste
▴ 60
0
votes
1
reply
1.1k
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.4 years ago
zwfanwz678
• 0
0
votes
0
replies
1.3k
views
Merge two BAM files into one paired-end file
paired-end reads
bam file
6.1 years ago
ioannis.vardaxis
▴ 30
0
votes
0
replies
868
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
7.0 years ago
guillaume.dachy
• 0
8 results • Page
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Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
by
James W. MacDonald
64k
There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
• 0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B
by
Mike Smith
★ 6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
Votes
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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