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pd.clariom.d.human
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db
MicroarrayData
Microarray
pd.clariom.d.human
24 months ago
amir.rakhimov.b
• 0
2
votes
5
replies
1.7k
views
Summarize Microarray data on a transcript level
pd.clariom.d.human
oligo
clariomdhumanprobeset.db
updated 3.4 years ago by
James W. MacDonald
65k • written 3.4 years ago by
mailtoshivam13
• 0
1
vote
3
replies
852
views
Selecting probe data from Clariom D assays using the fid probe tags
clariom
pd.clariom.d.human
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
AliStair Rust
• 0
0
votes
1
reply
895
views
Affy ClariomD human transcriptome annotation
affy
annotation
pd.clariom.d.human
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
anitabaery
• 0
1
vote
1
reply
1.2k
views
Unknown gene names in pd.clariom.d.human annotation package
microarray
pd.clariom.d.human
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
Antonio Ahn
▴ 10
1
vote
6
replies
1.6k
views
Remove a list of specific probes from an HTAFeatureSet
pd.clariom.d.human
affy
probe
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
jacorvar
▴ 40
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Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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