Biostar Pearsoncorrelation

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401

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rna-seq gcn desq2 pearsoncorrelation

4.2 years ago aishu.jp ▴ 20

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421

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correlation pearsoncorrelation rna-seq differential gene expression

4.3 years ago saad_k6 • 0

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1.2k

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microarray pearsoncorrelation coexpression spearman

updated 5.4 years ago by James W. MacDonald 60k • written 5.4 years ago by juls • 0

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993

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diffbind heatmap pearsoncorrelation

updated 6.1 years ago by Rory Stark ★ 4.4k • written 6.1 years ago by shubhibartaria • 0

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3.5k

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limma rnaseq batch effect pearsoncorrelation

updated 6.5 years ago by Aaron Lun ★ 27k • written 6.5 years ago by elpsakkas • 0

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8.5k

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gplots heatmap.2 bioconductor pearsoncorrelation average

7.1 years ago svlachavas ▴ 800

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Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 1000

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

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Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

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