Bioconductor Pearsoncorrelation

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1.5k

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correlation pearsoncorrelation rna-seq differential gene expression

updated 2.1 years ago by ATpoint ★ 5.0k • written 7.8 years ago by saad_k6 • 0

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1.1k

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rna-seq gcn desq2 pearsoncorrelation

7.6 years ago aishu.jp ▴ 30

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2.5k

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microarray pearsoncorrelation coexpression spearman

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by juls • 0

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2.3k

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diffbind heatmap pearsoncorrelation

updated 9.6 years ago by Rory Stark ★ 5.2k • written 9.6 years ago by shubhibartaria ▴ 10

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6.2k

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limma rnaseq batch effect pearsoncorrelation

updated 9.9 years ago by Aaron Lun ★ 29k • written 9.9 years ago by elpsakkas • 0

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11k

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gplots heatmap.2 bioconductor pearsoncorrelation average

10.5 years ago svlachavas ▴ 840

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Comment: limpa analysis advice by Gordon Smyth 53k

Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …

Comment: limpa analysis advice by SamGG ▴ 360

Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…

Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0

Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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