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pearsoncorrelation
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How to manage self loop in gene coexpression network constructed using Pearson correlation in Cor() function
rna-seq
gcn
desq2
pearsoncorrelation
4.2 years ago
aishu.jp
▴ 20
0
votes
0
replies
421
views
Human genes correlation to Bacterial genes
correlation
pearsoncorrelation
rna-seq
differential gene expression
4.3 years ago
saad_k6
• 0
0
votes
2
replies
1.2k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 5.4 years ago by
James W. MacDonald
60k • written 5.4 years ago by
juls
• 0
1
vote
1
reply
993
views
DiffBind affinity vs occupancy Heatmaps
diffbind
heatmap
pearsoncorrelation
updated 6.1 years ago by
Rory Stark
★ 4.4k • written 6.1 years ago by
shubhibartaria
• 0
4
votes
12
replies
3.5k
views
remove batch effect using limma
limma
rnaseq
batch effect
pearsoncorrelation
updated 6.5 years ago by
Aaron Lun
★ 27k • written 6.5 years ago by
elpsakkas
• 0
1
vote
2
replies
8.5k
views
Use of various distance measures and clustering methods in heatmap creation
gplots
heatmap.2
bioconductor
pearsoncorrelation
average
7.1 years ago
svlachavas
▴ 800
6 results • Page
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Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Alejandro Reyes
★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Answer: spot- vs cell-level data access
by
Leonardo Collado Torres
▴ 1000
Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
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