Showing : pearsoncorrelation • reset
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Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 17 months ago by ★ 4.8k • written 7.1 years ago by • 0
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How to manage self loop in gene coexpression network constructed using Pearson correlation in Cor() function
rna-seq gcn desq2 pearsoncorrelation
6.9 years ago aishu.jp ▴ 30
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Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray pearsoncorrelation coexpression spearman
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
2
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DiffBind affinity vs occupancy Heatmaps
diffbind heatmap pearsoncorrelation
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 10
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5.7k
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remove batch effect using limma
limma rnaseq batch effect pearsoncorrelation
updated 9.2 years ago by ★ 28k • written 9.2 years ago by • 0
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Use of various distance measures and clustering methods in heatmap creation
gplots heatmap.2 bioconductor pearsoncorrelation average
9.9 years ago svlachavas ▴ 840
6 results • Page 1 of 1
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Comment: Heatmap of rnaseq data with z-score scale by Paul Harrison ▴ 110
There can be considerable differences between datasets just due to different handling, sequencing method, batch effects, etc etc, and this …
Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by ATpoint ★ 4.8k
What is lac cells? You mean 7000-9000 cells? Please check first that the function runs OOM even without any of these multicore options set.…
Comment: parameters of filterByExpr by caroline.zanchi ▴ 10
It worked, I think I finally understand and accept that fact. Sorry and thank you again !
Comment: parameters of filterByExpr by Gordon Smyth 52k
You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi by Gordon Smyth 52k
modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…
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Comment: Heatmap of rnaseq data with z-score scale
Answer: parameters of filterByExpr
Comment: Heatmap of rnaseq data with z-score scale
Answer: LogFC values in edgeR - w/wo intercept
How to formulate 2 factor nested design in DESeq2
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