Biostar Pearsoncorrelation

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329

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rna-seq gcn desq2 pearsoncorrelation

3.3 years ago aishu.jp ▴ 20

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340

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correlation pearsoncorrelation rna-seq differential gene expression

3.4 years ago saad_k6 • 0

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1.0k

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microarray pearsoncorrelation coexpression spearman

updated 4.6 years ago by James W. MacDonald 58k • written 4.6 years ago by juls • 0

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847

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diffbind heatmap pearsoncorrelation

updated 5.2 years ago by Rory Stark ★ 4.1k • written 5.2 years ago by shubhibartaria • 0

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3.0k

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limma rnaseq batch effect pearsoncorrelation

updated 5.6 years ago by Aaron Lun ★ 27k • written 5.6 years ago by elpsakkas • 0

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gplots heatmap.2 bioconductor pearsoncorrelation average

6.2 years ago svlachavas ▴ 780

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Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

Cross posted to Biostars https://www.biostars.org/p/9490039/

Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…

Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k

The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k

The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …

Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850

Cross posted at Biostars: https://www.biostars.org/p/9490151/

Votes

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2

Answer: Log fold change interpretation of time series with Wald test

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Popular Question to Hans-Ulrich Klein ▴ 330