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Comment: 3-factor DESeq2 trime-series analysis
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swbarnes2
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What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…
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Thanks for your reply.
" normFactors <- exp(-1 * offst(set2))
normFactors <- normFactors / exp(rowMeans(log(normFactors)))
normalizat…
Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
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I'm not familiar with this usage, or code here
```
normFactors <- exp(-1 * offst(set2))
```
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The fitted values are on the log2CPM scale. I would have told you if they were not!
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