Bioconductor Phastcons

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ATACseqQC bsgenome phastcons rtracklayer

updated 8.6 years ago by Ou, Jianhong ★ 1.3k • written 8.6 years ago by crysis405 ▴ 10

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phastcons

updated 10.6 years ago by Robert Castelo ★ 3.4k • written 11.0 years ago by Diego Diez ▴ 760

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variantfiltering phastcons

updated 10.6 years ago by Robert Castelo ★ 3.4k • written 10.7 years ago by Stefanie Tauber ▴ 40

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phastcons

11.1 years ago Brian Smith ▴ 120

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Lluís Revilla Sancho ▴ 760

Popular Question to James W. MacDonald 68k