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variantfiltering
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Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
10 months ago
Bogdan
▴ 670
0
votes
1
reply
458
views
VariantFiltering error
VariantFiltering
updated 13 months ago by
Robert Castelo
★ 3.3k • written 13 months ago by
Andrew Beggs
▴ 90
0
votes
1
reply
1.6k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 20 months ago by
James W. MacDonald
66k • written 21 months ago by
Mohamed
▴ 30
0
votes
3
replies
1.5k
views
library VaraintFiltration looking for explanation of pedigree file
bioconductor
variantfiltering
6.9 years ago
Claus.Hultschig
• 0
3
votes
2
replies
1.5k
views
filtering VCF files
variantannotation
variantfiltering
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.2k
views
Problems with autosomalRecessiveHomozygous
VariantFiltering
9.0 years ago
claire.simpson
• 0
4
votes
0
replies
1.6k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
9.1 years ago
Matthew Ritchie
▴ 1000
1
vote
1
reply
1.4k
views
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
variantfiltering
phastcons
updated 9.3 years ago by
Robert Castelo
★ 3.3k • written 9.3 years ago by
Stefanie Tauber
▴ 40
0
votes
0
replies
1.8k
views
problems installing VariantFiltering package
VariantFiltering
VariantFiltering
10.2 years ago
Robert Castelo
★ 3.3k
9 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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