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pickSoftThreshold
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Drop of soft-threshold curve with high power values
wgcna
picksoftthreshold
scale-free topology
co-expression network
6.1 years ago
marcantoine.guery
• 0
2
votes
0
replies
1.9k
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'Error in summary(lm1)$coefficients[2, 1] : subscript out of bounds' while running pickSoftThreshold in WGCNA
wgcna
picksoftthreshold
6.1 years ago
aditi
▴ 20
1
vote
1
reply
1.8k
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WGCNA - Choosing the best threshold
wgcna
sft
picksoftthreshold
threshold
rnaseq
updated 6.3 years ago by
Peter Langfelder
★ 3.0k • written 6.3 years ago by
Fabricio Almeida-Silva
▴ 40
0
votes
3
replies
1.7k
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Unable to get soft threshold power using WGCNA for RNA-seq data
rnaseq
wgcna
picksoftthreshold
updated 7.6 years ago by
Lluís Revilla Sancho
▴ 730 • written 7.6 years ago by
divara01
• 0
0
votes
2
replies
4.1k
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WGCNA - problems picking a suitable power
WGCNA
pickSoftThreshold
power
RNA-Seq
updated 8.2 years ago by
Peter Langfelder
★ 3.0k • written 8.2 years ago by
mrodrigues.fernanda
▴ 10
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Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
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• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
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3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
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Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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