Bioconductor Picksoftthreshold

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wgcna picksoftthreshold scale-free topology co-expression network

6.6 years ago marcantoine.guery • 0

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wgcna picksoftthreshold

6.6 years ago aditi ▴ 20

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wgcna sft picksoftthreshold threshold rnaseq

updated 6.8 years ago by Peter Langfelder ★ 3.0k • written 6.8 years ago by Fabricio Almeida-Silva ▴ 40

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1.9k

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rnaseq wgcna picksoftthreshold

updated 8.1 years ago by Lluís Revilla Sancho ▴ 760 • written 8.1 years ago by divara01 • 0

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4.7k

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WGCNA pickSoftThreshold power RNA-Seq

updated 8.7 years ago by Peter Langfelder ★ 3.0k • written 8.7 years ago by mrodrigues.fernanda ▴ 10

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

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A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k