Bioconductor Picksoftthreshold

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727

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WGCNA pickSoftThreshold SignedNowick

updated 8 months ago by ATpoint ★ 5.0k • written 8 months ago by ddrummer0056 • 0

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1.2k

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wgcna picksoftthreshold scale-free topology co-expression network

7.5 years ago marcantoine.guery • 0

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2.4k

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wgcna picksoftthreshold

7.6 years ago aditi ▴ 20

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2.6k

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wgcna sft picksoftthreshold threshold rnaseq

updated 7.8 years ago by Peter Langfelder ★ 3.0k • written 7.8 years ago by Fabricio Almeida-Silva ▴ 40

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2.3k

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rnaseq wgcna picksoftthreshold

updated 9.1 years ago by Lluís Revilla Sancho ▴ 760 • written 9.1 years ago by divara01 • 0

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5.9k

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WGCNA pickSoftThreshold power RNA-Seq

updated 9.7 years ago by Peter Langfelder ★ 3.0k • written 9.7 years ago by mrodrigues.fernanda ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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