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picksoftthreshold
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Drop of soft-threshold curve with high power values
wgcna
picksoftthreshold
scale-free topology
co-expression network
6.1 years ago
marcantoine.guery
• 0
2
votes
0
replies
1.9k
views
'Error in summary(lm1)$coefficients[2, 1] : subscript out of bounds' while running pickSoftThreshold in WGCNA
wgcna
picksoftthreshold
6.1 years ago
aditi
▴ 20
1
vote
1
reply
1.8k
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WGCNA - Choosing the best threshold
wgcna
sft
picksoftthreshold
threshold
rnaseq
updated 6.3 years ago by
Peter Langfelder
★ 3.0k • written 6.3 years ago by
Fabricio Almeida-Silva
▴ 40
0
votes
3
replies
1.7k
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Unable to get soft threshold power using WGCNA for RNA-seq data
rnaseq
wgcna
picksoftthreshold
updated 7.6 years ago by
Lluís Revilla Sancho
▴ 730 • written 7.6 years ago by
divara01
• 0
0
votes
2
replies
4.2k
views
WGCNA - problems picking a suitable power
WGCNA
pickSoftThreshold
power
RNA-Seq
updated 8.2 years ago by
Peter Langfelder
★ 3.0k • written 8.3 years ago by
mrodrigues.fernanda
▴ 10
5 results • Page
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by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
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by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
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